Transcript 493101

Transcript

ID CARD

MetamORF ID

493101

ENSMUST00000204368

Name

Ppp6c-204

Strand

Biotype

protein_coding

Start-end positions

39199847-39226032

CDS Start-stop positions

-39206654

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:67857

Aliases

2310003C10Rik,
ENSMUSG00000026753, MGI:1915107, NCBI:67857,
OFF:Ppp6c, Pp6C, Ppp6c

Chr 2

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
494413	66	GTG ...	VST ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	E14, Spleen_B_cell
743584	75	ATG ...	MIF ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	3T3, B_cell, E14, Liver, MEF
743808	96	TTG ...	LLF ...	Ribo-seq	TTG		6	sORFs_org_Mouse	sORF	3T3, B_cell, E14, MEF
493100	96	CTG ...	LLL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
105085	57	ATG ...	MFV ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell, v6-5
733337	57	ATG ...	MEM ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF	MEF, v6-5
107741	63	GTG ...	VTM ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	sORF	MEF, Spleen_B_cell, v6-5
117307	51	GTG ...	VIC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	Spleen_B_cell, v6-5
743104	66	GTG ...	VNC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	sORF	3T3, E14, Liver, MEF
1638688	51	ATG ...	MLM ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	MEF
738156	63	CTG ...	LFR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	B_cell, E14, MEF, NSC
497370	90	TTG ...	LEE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF	E14, MEF, Spleen_B_cell, v6-5

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