Transcript 192054

Transcript

ID CARD

MetamORF ID

192054

ENSMUST00000204164

Name

Rpn1-204

Strand

Biotype

retained_intron

Start-end positions

88101571-88103387

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:103963

Aliases

AU018702,
D6Wsu137e, ENSMUSG00000030062, MGI:98084,
NCBI:103963, OFF:Rpn1, Rpn-1,
Rpn1

Chr 6

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
3210	45	GTG ...	VRC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1246322	57	ATA ...	IDT ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1246243	297	AAG ...	KSL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
68394	69	ATG ...	MRL ...	Ribo-seq	ATG	weak	13	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
198908	129	CTG ...	LLT ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, R1E, Spleen_B_cell
192053	135	GTG ...	VSL ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, R1E, Spleen_B_cell
200204	63	CTG ...	LYH ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
197064	63	CTG ...	LSI ...	Ribo-seq	CTG	moderate	12	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
195409	126	TTG ...	LTD ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, R1E, Spleen_B_cell
206528	117	ATG ...	MSS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, R1E, Spleen_B_cell
195734	72	TTG ...	LMR ...	Ribo-seq	TTG	moderate	12	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, v6-5
907349	132	ATA ...	IQA ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
907384	36	ATA ...	ISL ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

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