Transcript 2221 | MetamORF

Transcript

ID CARD

MetamORF ID

2221

ENSMUST00000202962

Name

Ctbp1-212

Strand

Biotype

protein_coding

Start-end positions

33248025-33274981

CDS Start-stop positions

33250217-33269448

CDS Relative positions

Sequences

Transcript sequence

GGT ...

Genome browsers

UCSC

Gene

NCBI:13016

Aliases

BARS,
Ctbp1, CtBP3/BARS, D4S115h,
D5H4S115, D5H4S115E, ENSMUSG00000037373,
MGI:1201685, NCBI:13016, OFF:Ctbp1

Chr 5

ORFs

55 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
180610	78	CTG ...	LTA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
66112	99	ATG ...	MRL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
180599	168	GTG ...	VSV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
176123	129	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
175441	93	CTG ...	LPP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
170795	54	CTG ...	LHS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
172633	72	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
171796	66	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
171583	42	CTG ...	LWK ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
183879	36	TTG ...	LTI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
179761	54	ATG ...	MIH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
190545	75	TTG ...	LDR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, Brain
190617	255	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
168348	69	CTG ...	LGI ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
172797	75	TTG ...	LAS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
171922	57	GTG ...	VAQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
181146	30	CTG ...	LRY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
171082	60	ATG ...	MVV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Brain
61520	120	TTG ...	LET ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
902746	81	ACG ...	TRF ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
180330	60	CTG ...	LKT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
559852	36	ATG ...	MHS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
66858	36	TTG ...	LLN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	sORF Upstream	Brain, Liver, Testis
171384	39	ATG ...	MLH ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Downstream sORF	Brain
167136	48	CTG ...	LRA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
184650	39	TTG ...	LVG ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
2220	30	GTG ...	VER ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Skin_tumor
176473	66	ATG ...	MHP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Downstream sORF	Brain
180300	36	GTG ...	VHP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
187898	48	ATG ...	MST ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
167515	36	ATG ...	MAG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
190589	78	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
185422	48	GTG ...	VAA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
178477	135	GTG ...	VEG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
903880	42	AGG ...	RRI ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC
174177	39	GTG ...	VEQ ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
182461	69	TTG ...	LNP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	Brain
184409	105	ATG ...	MAC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
181346	111	GTG ...	VWA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
906334	81	ATC ...	IGA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF Upstream	BMDC
181017	42	CTG ...	LPG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
168300	171	GTG ...	VWP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
185103	57	ATG ...	MCR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
176003	39	GTG ...	VVH ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
175470	33	GTG ...	VTE ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
184039	105	TTG ...	LKN ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
179180	147	CTG ...	LLW ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
181854	162	GTG ...	VAP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
183411	48	TTG ...	LAA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
184150	105	CTG ...	LSH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	Brain
190985	201	CTG ...	LRR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	BMDC, Brain
172706	63	CTG ...	LWS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	Brain
176443	36	CTG ...	LGQ ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain
180858	183	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF Upstream	BMDC, Brain
169167	54	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Overlapping sORF Upstream	Brain

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