Transcript 167232

Transcript

ID CARD

MetamORF ID

167232

ENSMUST00000201776

Name

Apbb2-221

Strand

Biotype

retained_intron

Start-end positions

66300661-66492172

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTA ...

Genome browsers

UCSC

Gene

NCBI:11787

Aliases

2310007D03Rik,
Apbb2, ENSMUSG00000029207, FE65L1,
MGI:108405, NCBI:11787, OFF:Apbb2,
Rirl1, TR2L, Zfra

Chr 5

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1614	39	TTG ...	LLT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
170610	39	CTG ...	LGM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
167231	201	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
177958	60	CTG ...	LNG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
173282	36	TTG ...	LPQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
180690	90	CTG ...	LVD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
185044	87	TTG ...	LHA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
173800	63	GTG ...	VQK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
172004	33	ATG ...	MQT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
168205	168	TTG ...	LRY ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
175243	93	GTG ...	VTR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
173068	87	GTG ...	VDP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
179083	63	CTG ...	LQN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
173229	36	TTG ...	LKQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
177677	78	TTG ...	LMS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
180088	111	CTG ...	LEN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
183117	66	GTG ...	VLH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
180002	45	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
170908	117	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
570606	39	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
179693	75	ATG ...	MSR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Brain
176116	54	CTG ...	LAF ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
169388	69	ATG ...	MQR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain

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