Transcript 167305

Transcript

ID CARD

MetamORF ID

167305

ENSMUST00000200857

Name

Nrbp1-203

Strand

Biotype

retained_intron

Start-end positions

31249355-31251563

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:192292

Aliases

B230344L17Rik,
ENSMUSG00000029148, MGI:2183436, NCBI:192292,
Nrbp, Nrbp1, OFF:Nrbp1

Chr 5

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
516931	51	CTG ...	LKF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
829784	42	TTG ...	LGY ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, E14
167304	81	CTG ...	LLE ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
1236034	60	AAG ...	KFN ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
561094	75	GTG ...	VPP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
177808	90	CTG ...	LTS ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
175196	78	CTG ...	LEE ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC, Brain, R1E
902485	45	AGG ...	RNS ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
182535	87	CTG ...	LFH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	R1E
184702	90	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
170275	72	CTG ...	LFE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
175270	129	CTG ...	LQS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1559969	60	ATG ...	MRA ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
168515	63	GTG ...	VPS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
172568	138	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E

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