Metam
ORF

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Transcript

ID CARD

MetamORF ID

130803

ID

ENSMUST00000200289

Name

S100a6-204

Strand

+

Biotype

nonsense_mediated_decay

Start-end positions

90613760-90624181

CDS Start-stop positions

90613767-90614322

CDS Relative positions

-

Sequences

Transcript sequence

ATC ...

Gene

ID

NCBI:20200

Aliases

2A9,
5B10, Cacy, CALCYCLIN,
ENSMUSG00000001025, MGI:1339467, NCBI:20200,
OFF:S100a6, PRA, S100a6


Chr 3

ORFs

20 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

977023 273

ATT ...

IGL ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF
976967 255

ATC ...

IFH ...

Ribo-seq
ATC 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF
130802 105

CTG ...

LMD ...

Ribo-seq
CTG moderate 6 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
Brain, E14, MEF,
Neutrophil, R1E, v6-5
137136 33

TTG ...

LAL ...

Ribo-seq
TTG strong 9 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
3T3, Brain, E14,
MEF, Neutrophil, R1E,
v6-5
976979 285

CTG ...

LDQ ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF
750944 93

CTG ...

LDR ...

Ribo-seq
CTG strong 8 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
3T3, E14, Liver,
MEF, Neutrophil, R1E,
v6-5
977021 81

AAG ...

KDQ ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF
137014 42

CTG ...

LGA ...

Ribo-seq
CTG moderate 8 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
Brain, E14, MEF,
Neutrophil, R1E, v6-5
977075 69

AGG ...

RPL ...

Ribo-seq
AGG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF
977005 108

AGG ...

RLM ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF
977066 129

CTG ...

LQD ...

Ribo-seq
CTG moderate 6 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
E14, MEF, Neutrophil,
R1E, v6-5
334 69

ATG ...

MPS ...

Ribo-seq
ATG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, NSC, v6-5
976972 261

GTG ...

VAI ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF
138208 30

CTG ...

LAR ...

Ribo-seq
CTG strong 5 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, Neutrophil,
v6-5
977017 114

ATT ...

IAR ...

Ribo-seq
ATT strong 1 sORFs_org_Mouse
    Alternative
    CDS
    NMD
    sORF
MEF
140014 30

ATG ...

MSP ...

Ribo-seq
ATG moderate 9 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
Brain, E14, MEF,
Neutrophil, R1E, v6-5
977003 81

ATC ...

ISH ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    NMD
    Overlapping
    sORF
    Upstream
MEF
16 33

ATG ...

MIW ...

Ribo-seq
ATG weak 9 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
3T3, E14, MEF,
Neutrophil, R1E, v6-5
750206 63

TTG ...

LAF ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    NMD
    Overlapping
    sORF
E14, MEF, Neutrophil,
NSC, v6-5
976959 246

AAG ...

KYS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    NMD
    Overlapping
    sORF
MEF

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5