Transcript 61562 | MetamORF

Transcript

ID CARD

MetamORF ID

61562

ENSMUST00000200186

Name

Dhx15-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

52150693-52190377

CDS Start-stop positions

52157529-52190350

CDS Relative positions

Sequences

Transcript sequence

TAA ...

Genome browsers

UCSC

Gene

NCBI:13204

Aliases

DBP1,
Ddx15, DEAH9, Dhx15,
ENSMUSG00000029169, HRH2, mDEAH9,
MGI:1099786, NCBI:13204, OFF:Dhx15

Chr 5

ORFs

84 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
65116	57	TTG ...	LFS ...	Ribo-seq	TTG		5	sORFs_org_Mouse	CDS NMD sORF	3T3, E14, MEF, R1E, v6-5
1240295	264	ATA ...	IVM ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
522653	63	TTG ...	LLD ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, MEF, R1E, v6-5
1236955	108	ATA ...	ILK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1235864	66	AGG ...	RDY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1235441	69	AAG ...	KRH ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
517337	51	TTG ...	LSH ...	Ribo-seq	TTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, R1E
1237324	219	AAG ...	KRI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1240691	69	ATA ...	IFL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
570380	51	CTG ...	LGE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
65044	153	CTG ...	LMS ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Downstream NMD sORF	3T3, BMDC, E14, MEF, Neutrophil, R1E
183874	45	TTG ...	LMT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1238999	99	AAG ...	KKA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
1234647	33	AAG ...	KLW ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
563441	57	TTG ...	LDL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, MEF, R1E, v6-5
62378	108	GTG ...	VII ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, Testis, v6-5
520175	39	TTG ...	LLV ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, R1E, v6-5
65489	123	GTG ...	VVQ ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
63643	36	CTG ...	LNV ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
1237003	225	ATT ...	IYF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1240002	108	ACG ...	TEA ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	E14
569108	120	CTG ...	LKL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
1236606	87	AAG ...	KPE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
518850	141	GTG ...	VKL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
1020296	126	CTG ...	LRS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Neutrophil
65933	75	GTG ...	VLY ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
560039	36	TTG ...	LVR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, v6-5
61706	192	TTG ...	LGP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	R1E, Testis
66245	42	GTG ...	VFC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	CDS NMD sORF	3T3, E14, MEF, R1E, v6-5
570477	72	CTG ...	LDG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14
1310746	87	CTG ...	LDT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
64667	114	TTG ...	LHP ...	Ribo-seq	TTG		13	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
62302	168	GTG ...	VTA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Testis
62897	75	TTG ...	LAT ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, Testis, v6-5
518879	45	TTG ...	LYL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, R1E
64580	54	CTG ...	LTT ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
64825	120	GTG ...	VAA ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, MEF, R1E, Testis, v6-5
1091240	78	ATG ...	MST ...	Ribo-seq	ATG		1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
519306	93	ATG ...	MYA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
1237085	114	ATT ...	IMD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Downstream NMD sORF	E14
1512151	33	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
516897	114	CTG ...	LPL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, R1E
1239191	60	ATA ...	IDG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
62782	105	GTG ...	VAQ ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, MEF, R1E, Testis, v6-5
1238815	117	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1240611	165	ATC ...	IIP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
65879	159	CTG ...	LPH ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, R1E, Testis, v6-5
1234691	120	AGG ...	RKL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
62854	165	TTG ...	LPG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, Testis, v6-5
566355	135	TTG ...	LMI ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
180566	51	TTG ...	LVL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1234796	36	TTG ...	LVT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Downstream NMD sORF	E14, R1E
1234347	234	ATT ...	IDE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1239266	168	ATT ...	INY ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Downstream NMD sORF	E14
65560	45	CTG ...	LTL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
65762	114	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Testis
65871	57	GTG ...	VLT ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
62639	75	GTG ...	VML ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, MEF, R1E, Testis, v6-5
1239387	105	ATA ...	IIL ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
175654	42	ATG ...	MTW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
63007	138	GTG ...	VKD ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
1236067	114	TTG ...	LDT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
64250	99	GTG ...	VLD ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
63217	39	CTG ...	LLN ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
563342	33	GTG ...	VRL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, E14, v6-5
562039	99	CTG ...	LYG ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, MEF, R1E, v6-5
1234282	45	ATT ...	IRF ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
902245	156	ACG ...	TGH ...	Ribo-seq	ACG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, E14
190378	117	ATG ...	MGK ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS NMD Overlapping sORF	Glioma, Liver, MEF, MESC
63193	96	TTG ...	LPR ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Downstream NMD sORF	3T3, BMDC, E14, MEF, Neutrophil, R1E, v6-5
901425	51	ACG ...	TTK ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
569321	111	GTG ...	VIL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
61561	183	GTG ...	VEY ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, R1E, Testis, v6-5
569225	132	ATG ...	MIW ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
64715	171	CTG ...	LVT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, Testis
1467743	30	CTG ...	LTG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
65653	123	CTG ...	LER ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, MEF, R1E, Testis, v6-5
566196	114	TTG ...	LVI ...	Ribo-seq	TTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E, v6-5
63934	174	GTG ...	VAH ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
568219	108	GTG ...	VKL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, E14, MEF, R1E
63386	300	TTG ...	LPP ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, BMDC, E14, MEF, R1E, Testis, v6-5
560563	45	CTG ...	LNR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, v6-5
1312211	105	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1240698	210	AAG ...	KRE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14

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