Transcript 129454

Transcript

ID CARD

MetamORF ID

129454

ENSMUST00000200084

Name

Gm42820-201

Strand

Biotype

TEC

Start-end positions

98121588-98124650

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

Gm42820

Aliases

Gm42820

Chr 3

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1221195	81	GTG ...	VSC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	E14
540365	45	GTG ...	VPP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	B_cell, v6-5
506335	81	ATG ...	MLE ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	E14
507159	78	TTG ...	LMS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	3T3, B_cell
507302	183	CTG ...	LLN ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	3T3, B_cell, E14
505607	141	CTG ...	LAT ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	sORF	3T3, B_cell, Brain
535827	69	GTG ...	VHP ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, B_cell
752417	33	GTG ...	VSA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF	3T3, Brain, Liver, MEF
535596	45	GTG ...	VPP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
503154	39	CTG ...	LSV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
503640	144	ATG ...	MLA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	3T3, B_cell, Brain
539526	78	CTG ...	LYQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
539310	75	ATG ...	MSV ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	B_cell
749864	51	CTG ...	LPV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	3T3
1222123	129	AGG ...	RKR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
750004	96	GTG ...	VPA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
129453	216	TTG ...	LCP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	Brain, Liver
503915	66	TTG ...	LCS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	3T3
1222978	96	CTG ...	LDG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	E14
505244	180	TTG ...	LNT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	3T3, B_cell
1220064	63	ATG ...	MVW ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	Brain, E14
1423586	207	GTG ...	VGF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	Liver
132429	198	GTG ...	VNL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF	B_cell, Brain, E14, Liver
540785	42	GTG ...	VCI ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF	3T3, B_cell, MEF, v6-5
136863	201	CTG ...	LVN ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	sORF	B_cell, Brain, Liver, Spleen_B_cell
537526	33	ATG ...	MTS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	sORF	3T3, B_cell, E14, v6-5

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