Transcript 52914 | MetamORF

Transcript

ID CARD

MetamORF ID

52914

ENSMUST00000200078

Name

Ddx20-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

105679620-105687452

CDS Start-stop positions

105683510-105687427

CDS Relative positions

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

NCBI:53975

Aliases

Ddx20,
dp103, ENSMUSG00000027905, GEMIN3,
MGI:1858415, NCBI:53975, OFF:Ddx20

Chr 3

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
505631	87	CTG ...	LNP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Liver, Spleen_B_cell
137427	195	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
135626	189	TTG ...	LAP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
52913	105	TTG ...	LAH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
140146	99	GTG ...	VNL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Spleen_B_cell
54285	141	TTG ...	LKQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
133917	75	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
1649183	30	GTG ...	VSY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
536369	42	TTG ...	LLF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell

Export data