Transcript 126841

Transcript

ID CARD

MetamORF ID

126841

ENSMUST00000198995

Name

Igsf3-203

Strand

Biotype

retained_intron

Start-end positions

101377083-101379540

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:78908

Aliases

1700016K10Rik,
2810035F16Rik, 4833439O17Rik, ENSMUSG00000042035,
Igsf3, MGI:1926158, mKIAA0466,
NCBI:78908, OFF:Igsf3

Chr 3

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
129816	165	ATG ...	MDF ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
1553077	30	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1171389	81	CTG ...	LRA ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
126840	117	ATG ...	MDG ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
1552641	138	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1551181	33	GTG ...	VLS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
135904	48	TTG ...	LGF ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
137024	45	ATG ...	MPA ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
135931	30	GTG ...	VCP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
135073	36	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
134040	156	TTG ...	LMK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
127805	153	ATG ...	MKK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1551164	114	TTG ...	LWD ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
136132	99	TTG ...	LTK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1551760	120	GTG ...	VFW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1173998	69	GTG ...	VGP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1174376	42	GTG ...	VLF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1551536	57	TTG ...	LAV ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain

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