Transcript 257856

Transcript

ID CARD

MetamORF ID

257856

ENSMUST00000198667

Name

Smarcc1-206

Strand

Biotype

retained_intron

Start-end positions

110185732-110206153

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTA ...

Genome browsers

UCSC

Gene

NCBI:20588

Aliases

AI115498,
BAF155, ENSMUSG00000032481, MGI:1203524,
msp3, NCBI:20588, OFF:Smarcc1,
Rsc8, Smarcc1, SRG3

Chr 9

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
617064	45	GTG ...	VLE ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
262570	63	GTG ...	VLA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
268133	63	TTG ...	LIC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1033056	36	GTG ...	VPL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1571441	213	CTG ...	LRL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
270046	114	TTG ...	LAY ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E
620803	51	CTG ...	LTH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1570569	30	CTG ...	LHL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1571458	129	TTG ...	LLF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
616103	33	TTG ...	LCP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1570999	156	CTG ...	LAY ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
619505	42	CTG ...	LEG ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
6272	45	ATG ...	MLE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
257855	264	GTG ...	VSE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain
617062	51	GTG ...	VLV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
617791	63	TTG ...	LTQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
259865	294	CTG ...	LEM ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, R1E
622390	78	TTG ...	LLT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
619734	39	CTG ...	LGL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
620019	48	TTG ...	LVF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
266624	33	CTG ...	LTG ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E
1571215	114	GTG ...	VMS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
624274	36	CTG ...	LTF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1570243	75	TTG ...	LPA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF
1570011	102	CTG ...	LSS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, MEF

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