Transcript 129928

Transcript

ID CARD

MetamORF ID

129928

ENSMUST00000198350

Name

Rabggtb-210

Strand

Biotype

nonsense_mediated_decay

Start-end positions

153907291-153912927

CDS Start-stop positions

153910139-

CDS Relative positions

Sequences

Transcript sequence

GCA ...

Genome browsers

UCSC

Gene

NCBI:19352

Aliases

ENSMUSG00000038975,
MGI:99537, NCBI:19352, OFF:Rabggtb,
Rabggtb

Chr 3

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
128312	30	GTG ...	VNV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	NMD sORF	MEF
1221123	114	ATA ...	IPE ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	NMD sORF	E14
130389	105	TTG ...	LSL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
137759	216	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
138687	210	GTG ...	VMD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	Brain, E14
1221753	48	ATT ...	IIL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
816666	75	GTG ...	VNG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	B_cell, MEF
1217975	105	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
137142	51	ATG ...	MVD ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
129015	183	GTG ...	VCY ...	Ribo-seq	GTG		4	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
135354	42	GTG ...	VLQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
817387	183	ATG ...	MCE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	NMD sORF	B_cell, MEF
819110	168	ATG ...	MSR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	B_cell, MEF
1172804	90	TTG ...	LGP ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF
1223140	39	ATT ...	IGL ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	NMD sORF	E14
130682	162	TTG ...	LAS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
138487	141	GTG ...	VDP ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	NMD sORF	E14, MEF, v6-5
129605	42	TTG ...	LLP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF
128078	54	TTG ...	LMV ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	MEF
1649376	189	CTG ...	LAM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	MEF
1648522	78	ATG ...	MVN ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	MEF
140865	165	GTG ...	VLA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
130200	96	CTG ...	LGE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF	MEF, v6-5
1728658	39	ATG ...	MWK ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
131190	48	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
129212	78	CTG ...	LTP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF
1171325	51	TTG ...	LSF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
817810	51	TTG ...	LEG ...	Ribo-seq	TTG		5	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF, v6-5
52050	33	ATG ...	MAQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, E14, MEF
130606	84	ATG ...	MRL ...	Ribo-seq	ATG		4	sORFs_org_Mouse	NMD sORF	B_cell, E14, MEF
132358	54	ATG ...	MPI ...	Ribo-seq	ATG		5	sORFs_org_Mouse	NMD sORF	B_cell, BMDC, E14, MEF
129927	243	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain

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