Transcript 51783 | MetamORF

Transcript

ID CARD

MetamORF ID

51783

ENSMUST00000198126

Name

Adh5-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

138443181-138454803

CDS Start-stop positions

138443182-138447908

CDS Relative positions

Sequences

Transcript sequence

CAT ...

Genome browsers

UCSC

Gene

NCBI:11532

Aliases

Adh-5,
Adh3, Adh5, ENSMUSG00000028138,
GSNOR, MGI:87929, NCBI:11532,
OFF:Adh5

Chr 3

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1218229	222	ATC ...	IIG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1552276	84	ATG ...	MPV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
52382	57	GTG ...	VTG ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Downstream NMD sORF	B_cell, Neutrophil, Testis
53985	51	GTG ...	VAP ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Testis
54221	279	CTG ...	LGG ...	Ribo-seq	CTG		14	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
52709	57	GTG ...	VES ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	B_cell, Brain, Liver, Neutrophil, NSC, Testis
134818	33	CTG ...	LLF ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC
537556	36	TTG ...	LWK ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, MEF, NSC, v6-5
54367	81	TTG ...	LGH ...	Ribo-seq	TTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
1552623	78	GTG ...	VTD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
53522	36	TTG ...	LPH ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, Testis, v6-5
132977	147	CTG ...	LFF ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Downstream NMD sORF	MEF
504383	51	ATG ...	MKV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, MEF, NSC
52829	93	GTG ...	VDY ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Testis
864792	42	ATG ...	MGA ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative Downstream NMD sORF	Glioma, Liver, MEF, MESC
539841	30	CTG ...	LFA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, E14, Liver, MEF, NSC, v6-5
133584	180	ATG ...	MGL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Downstream NMD sORF	Glioma, Liver, MEF, MESC
866200	33	GTG ...	VVF ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1221909	156	ATT ...	ISP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
506222	111	CTG ...	LGC ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, R1E, Spleen_B_cell, v6-5
126910	87	CTG ...	LLL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	MEF
132510	84	TTG ...	LLK ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	MEF
52456	240	GTG ...	VAG ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
54052	114	GTG ...	VVV ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Downstream NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, Spleen_B_cell, Testis
138087	45	GTG ...	VLE ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Brain, MEF, NSC, v6-5
1173358	54	GTG ...	VIS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Downstream NMD sORF	MEF
1222425	33	ACG ...	THM ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
1222292	114	AGG ...	RLG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
138262	60	CTG ...	LVD ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, NSC, v6-5
504739	42	CTG ...	LEL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, MEF, NSC
53901	117	GTG ...	VIR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Liver, Testis
1222359	207	ATC ...	INK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
53524	87	GTG ...	VIL ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
54760	258	GTG ...	VIM ...	Ribo-seq	GTG		14	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
52201	60	CTG ...	LVT ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Downstream NMD sORF	B_cell, MEF, Neutrophil, Testis
132765	51	GTG ...	VWR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
51782	120	CTG ...	LSG ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, B_cell, Brain, E14, Liver, Neutrophil, NSC, Testis, v6-5
866438	102	TTG ...	LWL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	MEF
53146	108	GTG ...	VGV ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Downstream NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
139371	39	TTG ...	LPL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC, v6-5
864756	96	CTG ...	LTS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Downstream NMD sORF	MEF
1218753	75	AGG ...	RGR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	E14
53917	264	CTG ...	LAV ...	Ribo-seq	CTG		15	sORFs_org_Mouse	Alternative Downstream NMD sORF	3T3, B_cell, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, Testis

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