Transcript 535684

Transcript

ID CARD

MetamORF ID

535684

ENSMUST00000196871

Name

Txnip-206

Strand

Biotype

processed_transcript

Start-end positions

96559511-96560204

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:56338

Aliases

1200008J08Rik,
AA682105, ENSMUSG00000038393, Hyplip1,
MGI:1889549, NCBI:56338, OFF:Txnip,
Tbp-2, THIF, Txnip,
VDUP1

Chr 3

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
538945	144	CTG ...	LSS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF
54449	243	ATG ...	MLT ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
53221	75	GTG ...	VQK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
53258	258	ATG ...	MTS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
54371	84	GTG ...	VAR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
52847	165	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
52157	234	TTG ...	LRT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
52168	150	CTG ...	LPL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
52244	120	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
748651	219	GTG ...	VVP ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
53505	192	TTG ...	LWP ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
538755	198	GTG ...	VAR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
540477	159	GTG ...	VFT ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
53833	261	GTG ...	VMT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
54646	240	CTG ...	LTL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
54158	141	GTG ...	VIG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, R1E
53577	171	TTG ...	LPM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	3T3, MEF

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