Transcript 168226

Transcript

ID CARD

MetamORF ID

168226

ENSMUST00000196644

Name

Sbno1-204

Strand

Biotype

protein_coding

Start-end positions

124392968-124426001

CDS Start-stop positions

-124414527

CDS Relative positions

Sequences

Transcript sequence

CGA ...

Genome browsers

UCSC

Gene

NCBI:243272

Aliases

9330180L10Rik,
AI849128, AW557836, BC021875,
ENSMUSG00000038095, MGI:2384298, mSno1,
NCBI:243272, OFF:Sbno1, Sbno,
Sbno1, sno

Chr 5

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
172338	60	ATG ...	MLM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	Brain
184350	57	TTG ...	LMV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
168225	93	GTG ...	VRV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Brain, R1E
522607	90	GTG ...	VAS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
570836	93	GTG ...	VRE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
562880	36	TTG ...	LVF ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	Neutrophil
521668	69	CTG ...	LTT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
562576	105	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
179679	81	GTG ...	VCC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Brain, MEF, v6-5
518143	93	TTG ...	LVA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF	MEF
176759	87	GTG ...	VGL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Brain, R1E
173945	72	ATG ...	MTS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, R1E
568042	72	CTG ...	LKR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	v6-5
560461	126	ATG ...	MSQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
574162	66	GTG ...	VIL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
1663027	60	GTG ...	VEV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	MEF
522887	42	ATG ...	MKH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Spleen_B_cell
572682	51	CTG ...	LWN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
172463	63	TTG ...	LML ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Brain
574048	105	TTG ...	LEY ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
1660235	132	GTG ...	VKK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF

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