Transcript 752066

Transcript

ID CARD

MetamORF ID

752066

ENSMUST00000196506

Name

Tm4sf1-203

Strand

Biotype

protein_coding

Start-end positions

57292783-57295125

CDS Start-stop positions

-57294788

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:17112

Aliases

ENSMUSG00000027800,
L6, M3s1, MGI:104678,
NCBI:17112, OFF:Tm4sf1, Tm4sf1

Chr 3

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
750547	72	GTG ...	VLR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Liver
413539	81	CTG ...	LIC ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
413508	69	ATG ...	MGR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	Liver
135916	54	GTG ...	VQD ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF	MEF
16825	69	TTG ...	LGW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
540330	78	TTG ...	LCS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	MEF
535709	60	ATG ...	MKR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
537911	90	CTG ...	LCH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF	MEF
139584	66	ATG ...	MGC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	sORF	3T3
536620	90	ATG ...	MLC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	Liver
413413	60	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF
413311	60	GTG ...	VCK ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	Liver, MEF
413251	96	CTG ...	LQD ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	MEF

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