Transcript 167711

Transcript

ID CARD

MetamORF ID

167711

ENSMUST00000196490

Name

Atp2a2-204

Strand

Biotype

retained_intron

Start-end positions

122488935-122501617

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:11938

Aliases

9530097L16Rik,
Atp2a2, D5Wsu150e, ENSMUSG00000029467,
MGI:88110, mKIAA4195, NCBI:11938,
OFF:Atp2a2, SERCA2, Serca2a,
SERCA2B

Chr 5

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1236476	150	AGG ...	RGR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1236683	93	ATT ...	ILL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
178432	30	GTG ...	VCN ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1921	150	TTG ...	LAW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
905264	42	AGG ...	RTE ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
63825	81	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1637	84	CTG ...	LEL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
175746	36	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
2127	75	GTG ...	VIE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
64881	72	ATG ...	MSL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, BMDC
180899	33	CTG ...	LAA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain
1236185	48	ATC ...	IDR ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
902512	72	ATT ...	IEQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
65597	66	CTG ...	LKW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
904111	87	AAG ...	KLL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1240774	123	ACG ...	TIT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
1774	87	TTG ...	LLE ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain

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