Transcript 535510

Transcript

ID CARD

MetamORF ID

535510

ENSMUST00000195839

Name

Mbnl1-225

Strand

Biotype

retained_intron

Start-end positions

60501265-60531622

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:56758

Aliases

ENSMUSG00000027763,
Mbnl, Mbnl1, MGI:1928482,
mKIAA0428, NCBI:56758, OFF:Mbnl1

Chr 3

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
535509	123	CTG ...	LKA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
537482	126	TTG ...	LLK ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
749104	87	GTG ...	VAG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
751419	117	GTG ...	VTR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
536447	33	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
539244	60	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
536729	75	CTG ...	LTL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
747992	60	CTG ...	LPR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
537318	159	TTG ...	LEP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
136303	42	ATG ...	MDI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
749419	30	GTG ...	VIV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
536837	81	ATG ...	MKL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
752496	33	GTG ...	VRR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
136386	192	CTG ...	LSD ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
540733	69	TTG ...	LSC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
535974	117	CTG ...	LPA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
536100	36	TTG ...	LCC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
539936	78	GTG ...	VPF ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
747441	105	CTG ...	LTT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
540229	33	CTG ...	LSI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
749960	99	TTG ...	LGK ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
539020	120	TTG ...	LLP ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
538783	45	ATG ...	MAR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	3T3
133614	165	TTG ...	LEI ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	3T3
749615	135	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
752423	129	TTG ...	LPC ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
535694	42	TTG ...	LLS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	3T3
535737	183	TTG ...	LHH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3

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