Transcript 27481 | MetamORF

Transcript

ID CARD

MetamORF ID

27481

ENSMUST00000195136

Name

Rnf149-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

39552469-39577356

CDS Start-stop positions

39555598-39565309

CDS Relative positions

Sequences

Transcript sequence

CCT ...

Genome browsers

UCSC

Gene

NCBI:67702

Aliases

1600023E10Rik,
AV037261, C76763, ENSMUSG00000048234,
Gm15832, Greul4, MGI:2677438,
NCBI:67702, OFF:Rnf149, Rnf149

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
419142	57	GTG ...	VGQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	C2C12, Liver
921831	81	ACG ...	THS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
966056	270	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
697444	36	ATG ...	MAF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF
1421216	225	GTG ...	VQK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver, R1E
950906	195	AGG ...	RNS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
675121	42	GTG ...	VSR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC, Liver
1397446	144	GTG ...	VFV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver
937611	195	ATA ...	IEI ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
1410762	144	CTG ...	LSV ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC, Liver
42042	93	CTG ...	LIF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Testis
929651	111	ATC ...	IIS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
1392695	138	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Liver
1395019	147	GTG ...	VVF ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver
1385775	228	CTG ...	LVQ ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver, R1E
931636	156	ACG ...	TGT ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
1414333	138	GTG ...	VAI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver
938164	57	ATG ...	MLS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
960437	285	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
936760	81	ATT ...	ISM ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
900402	108	ATG ...	MSM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
1043324	96	GTG ...	VCI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil
27480	66	CTG ...	LYT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Testis

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