Transcript 1181838

Transcript

ID CARD

MetamORF ID

1181838

ENSMUST00000194961

Name

Capn2-205

Strand

Biotype

retained_intron

Start-end positions

182472539-182481494

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:12334

Aliases

AI326419,
CALP80, Capa-2, Capa2,
Capn2, ENSMUSG00000026509, m-calpain,
m-calpin, MGI:88264, NCBI:12334,
OFF:Capn2

Chr 1

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1181837	57	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1295622	102	AAG ...	KTS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
721141	60	ATG ...	MRR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Liver
1192783	48	ATT ...	IPT ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
7544	69	TTG ...	LTP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1299778	96	AGG ...	RSG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1190577	108	ATC ...	IDV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
588661	48	TTG ...	LTM ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
679724	42	ATG ...	MDS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, Liver
1411077	75	CTG ...	LKE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1263220	45	ACG ...	TMD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14

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