Transcript 305826

Transcript

ID CARD

MetamORF ID

305826

ENSMUST00000194608

Name

Parp1-207

Strand

Biotype

nonsense_mediated_decay

Start-end positions

180568924-180579161

CDS Start-stop positions

180569034-180577631

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:11545

Aliases

5830444G22Rik,
Adprp, Adprt1, AI893648,
ARTD1, C80510, ENSMUSG00000026496,
MGI:1340806, msPARP, NCBI:11545,
OFF:Parp1, PARP, parp-1,
Parp1, PPOL, sPARP-1

Chr 1

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1129109	69	TTG ...	LVL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	Brain, v6-5
476636	219	ATG ...	MFL ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Spleen_B_cell, v6-5
1538007	273	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
38378	195	ATG ...	MGK ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Spleen_B_cell, v6-5
459182	39	CTG ...	LLL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, Spleen_B_cell, v6-5
1540191	126	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
509197	54	CTG ...	LVP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, Spleen_B_cell, v6-5
1126270	75	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	v6-5
1528469	261	TTG ...	LWP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
305825	33	CTG ...	LEG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, Spleen_B_cell, v6-5
691288	39	GTG ...	VAA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, v6-5
454943	45	ATG ...	MEV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, Spleen_B_cell, v6-5

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