Transcript 268776

Transcript

ID CARD

MetamORF ID

268776

ENSMUST00000192704

Name

Dcaf8-206

Strand

Biotype

protein_coding

Start-end positions

172148142-172195466

CDS Start-stop positions

172165867-172194672

CDS Relative positions

Sequences

Transcript sequence

CGG ...

Genome browsers

UCSC

Gene

NCBI:98193

Aliases

AA408877,
AA433120, AA792214, AU018973,
C76055, D1Dau35e, D1Ucla4,
Dcaf8, ENSMUSG00000026554, H326,
MGI:91860, NCBI:98193, OFF:Dcaf8,
Wdr42a

Chr 1

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1125172	30	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
468578	60	TTG ...	LGL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	BMDC
489377	177	TTG ...	LRV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
133955	51	CTG ...	LSC ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14, MEF, NSC
352625	255	ATG ...	MMS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
447051	36	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
968501	36	AGT ...	SKR ...	Ribo-seq	AGT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
503519	126	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
322833	117	CTG ...	LGI ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
386317	30	TTG ...	LMR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
309901	69	CTG ...	LVV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
459775	123	GTG ...	VTP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
478976	66	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
477380	102	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
494200	102	GTG ...	VPG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
96247	33	TTG ...	LGA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
273299	45	CTG ...	LEL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
327894	129	ATG ...	MAA ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	Brain, v6-5
700082	63	GTG ...	VSI ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
492485	123	GTG ...	VTP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
569662	180	CTG ...	LRF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
390719	252	ATG ...	MSE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
390410	45	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
268775	48	CTG ...	LIC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, MEF, v6-5
291894	141	TTG ...	LCT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
387429	39	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
495802	66	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
496566	171	GTG ...	VAT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	NSC
465703	126	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
100076	297	GTG ...	VDS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
506331	93	ATG ...	MDR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
1503395	36	GTG ...	VWP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
346598	126	GTG ...	VEL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
105714	69	ATG ...	MKT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
308277	81	TTG ...	LRA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, v6-5
1141285	36	TTG ...	LRV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
497574	93	ATG ...	MDR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	NSC
342733	111	TTG ...	LYS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
376737	273	GTG ...	VTR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
356166	39	TTG ...	LIV ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
92585	39	CTG ...	LKR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
315628	150	GTG ...	VPA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
313488	42	CTG ...	LAR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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