Transcript 10835 | MetamORF

Transcript

ID CARD

MetamORF ID

10835

ENSMUST00000192483

Name

Capn2-203

Strand

Biotype

retained_intron

Start-end positions

182483905-182517608

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:12334

Aliases

AI326419,
CALP80, Capa-2, Capa2,
Capn2, ENSMUSG00000026509, m-calpain,
m-calpin, MGI:88264, NCBI:12334,
OFF:Capn2

Chr 1

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1204525	153	AGG ...	RTT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
366873	81	ATG ...	MRK ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC
279252	42	TTG ...	LKT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
10834	45	ATG ...	MRT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
1181076	126	AAG ...	KWK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
399724	105	GTG ...	VDD ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
687514	81	GTG ...	VPC ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
1291870	33	AAG ...	KVL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
379354	63	TTG ...	LIR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1361652	42	CTG ...	LLA ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF
356334	78	ATG ...	MKH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
363754	117	GTG ...	VEV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
195472	72	CTG ...	LQK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
686610	87	GTG ...	VRQ ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1004244	282	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
327573	60	GTG ...	VPP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1347729	39	CTG ...	LAA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
595579	162	CTG ...	LQR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
15270	39	CTG ...	LQI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
942898	48	ATC ...	IRA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
304450	111	GTG ...	VVV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
706738	180	ATG ...	MRE ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1180334	78	AGG ...	RKS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
383416	108	GTG ...	VVD ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	v6-5
331128	63	GTG ...	VHS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
311336	60	TTG ...	LCL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC
300106	72	CTG ...	LLF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
389589	93	CTG ...	LPT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
15133	75	GTG ...	VET ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Skin_tumor, v6-5
1348498	66	GTG ...	VWL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1334287	69	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14

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