Transcript 5901 | MetamORF

Transcript

ID CARD

MetamORF ID

5901

ENSMUST00000192401

Name

Gpx1-203

Strand

Biotype

retained_intron

Start-end positions

108338903-108339802

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:14775

Aliases

AI195024,
AL033363, CGPx, ENSMUSG00000063856,
Gpx, GPx-1, Gpx1,
GSHPx-1, MGI:104887, NCBI:14775,
OFF:Gpx1

Chr 9

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6552	54	TTG ...	LRM ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor, v6-5
84270	120	GTG ...	VCC ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, v6-5
267710	60	ATG ...	MPR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, MEF, Neutrophil, Spleen_B_cell, v6-5
86117	60	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
5900	48	ATG ...	MSR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Skin_tumor, v6-5
1273609	156	ACG ...	TDS ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
84341	168	GTG ...	VSA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF
6192	144	CTG ...	LRH ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, Skin_tumor, v6-5
6386	45	CTG ...	LRG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
85561	63	GTG ...	VLL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF
6109	54	CTG ...	LGS ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
5918	60	GTG ...	VSL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
6632	33	GTG ...	VLL ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Skin_tumor
6140	30	CTG ...	LLI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor
266211	102	GTG ...	VYA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, v6-5
83744	180	GTG ...	VQG ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF
6398	78	CTG ...	LTG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Skin_tumor

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