Transcript 434512

Transcript

ID CARD

MetamORF ID

434512

ENSMUST00000191997

Name

Gpx1-202

Strand

Biotype

protein_coding

Start-end positions

108339243-108340250

CDS Start-stop positions

108339481-108340136

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:14775

Aliases

AI195024,
AL033363, CGPx, ENSMUSG00000063856,
Gpx, GPx-1, Gpx1,
GSHPx-1, MGI:104887, NCBI:14775,
OFF:Gpx1

Chr 9

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
6398	78	CTG ...	LTG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	BMDC, E14, Liver
436398	99	TTG ...	LPG ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, Liver
5900	48	ATG ...	MSR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14
266211	102	GTG ...	VYA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	sORF Upstream	BMDC, E14, Liver, R1E
924934	99	ACG ...	TIC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
435900	60	GTG ...	VFP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
85561	63	GTG ...	VLL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver
5918	60	GTG ...	VSL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	sORF Upstream	B_cell, E14, Liver, NSC
86117	60	CTG ...	LLG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver
1113598	42	ATG ...	MPC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	v6-5
84270	120	GTG ...	VCC ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Alternative sORF Upstream	E14, Liver
6140	30	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
6552	54	TTG ...	LRM ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC, E14, R1E
84341	168	GTG ...	VSA ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, Liver, MEF, Neutrophil, NSC
83744	180	GTG ...	VQG ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative sORF Upstream	B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell
6386	45	CTG ...	LRG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF Upstream	BMDC, E14, Liver, NSC
434970	87	TTG ...	LRS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
6632	33	GTG ...	VLL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
6109	54	CTG ...	LGS ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	sORF Upstream	B_cell, BMDC, E14, Liver, R1E

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