Transcript 22176 | MetamORF

Transcript

ID CARD

MetamORF ID

22176

ENSMUST00000191689

Name

Dcaf8-202

Strand

Biotype

protein_coding

Start-end positions

172148118-172195507

CDS Start-stop positions

172165867-172194672

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:98193

Aliases

AA408877,
AA433120, AA792214, AU018973,
C76055, D1Dau35e, D1Ucla4,
Dcaf8, ENSMUSG00000026554, H326,
MGI:91860, NCBI:98193, OFF:Dcaf8,
Wdr42a

Chr 1

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
100076	297	GTG ...	VDS ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
352625	255	ATG ...	MMS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
506331	93	ATG ...	MDR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
497722	54	TTG ...	LGL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	sORF Upstream	B_cell, Liver, MEF, Spleen_B_cell
96247	33	TTG ...	LGA ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
105714	69	ATG ...	MKT ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
477380	102	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
489377	177	TTG ...	LRV ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
32289	93	CTG ...	LAS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Testis
315628	150	GTG ...	VPA ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
346598	126	GTG ...	VEL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
67052	159	GTG ...	VVV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, Testis
387429	39	GTG ...	VGL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
498582	84	GTG ...	VTA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
273299	45	CTG ...	LEL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
309901	69	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
790854	54	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
478976	66	CTG ...	LLH ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Spleen_B_cell
700082	63	GTG ...	VSI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
749537	78	CTG ...	LPL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, MEF
459775	123	GTG ...	VTP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
497574	93	ATG ...	MDR ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
92585	39	CTG ...	LKR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
465703	126	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1416791	93	ATG ...	MMK ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
495802	66	CTG ...	LLH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
502281	48	CTG ...	LTS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF Upstream	B_cell, MEF, Spleen_B_cell
291894	141	TTG ...	LCT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
668154	36	GTG ...	VVP ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Liver
268775	48	CTG ...	LIC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
522889	84	GTG ...	VTA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
27387	156	GTG ...	VVA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, Testis
37993	153	GTG ...	VAA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, Testis
390719	252	ATG ...	MSE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
390410	45	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
750365	66	GTG ...	VAA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF
547593	72	CTG ...	LAS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell, Liver, MEF
468578	60	TTG ...	LGL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF Upstream	B_cell, Spleen_B_cell
733094	69	GTG ...	VVA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, MEF
356166	39	TTG ...	LIV ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
503519	126	GTG ...	VVT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
376737	273	GTG ...	VTR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
133955	51	CTG ...	LSC ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Liver
22175	48	CTG ...	LPI ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Testis
322833	117	CTG ...	LGI ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
731676	72	GTG ...	VVV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative sORF Upstream	3T3, Liver, MEF
342733	111	TTG ...	LYS ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
569662	180	CTG ...	LRF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
496566	171	GTG ...	VAT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Liver, Spleen_B_cell
492485	123	GTG ...	VTP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver, Spleen_B_cell
447051	36	GTG ...	VWP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell
711104	99	CTG ...	LPL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, B_cell
308277	81	TTG ...	LRA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
494200	102	GTG ...	VPG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Spleen_B_cell

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