Transcript 405442

Transcript

ID CARD

MetamORF ID

405442

ENSMUST00000191058

Name

Usp37-207

Strand

Biotype

retained_intron

Start-end positions

74449502-74505785

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:319651

Aliases

4932415L06Rik,
C330008N13Rik, ENSMUSG00000033364, MGI:2442483,
NCBI:319651, OFF:Usp37, Usp37

Chr 1

ORFs

24 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1147300	57	ATG ...	MLY ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1146802	96	TTG ...	LED ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1141121	87	CTG ...	LFS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1362423	42	CTG ...	LTE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
405441	123	CTG ...	LLI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
1151770	102	CTG ...	LRC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1155125	45	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1128951	42	GTG ...	VLR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1611354	39	CTG ...	LKR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1127785	66	ATG ...	MGA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
1134557	87	GTG ...	VEK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1115255	39	GTG ...	VWW ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
1617958	36	GTG ...	VEW ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
1135638	51	TTG ...	LTL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1129752	57	TTG ...	LLK ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1595862	42	CTG ...	LEV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1133317	204	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	v6-5
697217	165	CTG ...	LKI ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, v6-5
1363477	39	ATG ...	MWR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1123393	48	GTG ...	VQI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	v6-5
1142303	30	GTG ...	VPC ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1641643	54	CTG ...	LFS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1598311	54	CTG ...	LDQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1141603	126	TTG ...	LGN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5

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