Transcript 13791 | MetamORF

Transcript

ID CARD

MetamORF ID

13791

ENSMUST00000190943

Name

Col3a1-207

Strand

Biotype

retained_intron

Start-end positions

45334200-45337297

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:12825

Aliases

AW550625,
Col3a-1, Col3a1, ENSMUSG00000026043,
MGI:88453, NCBI:12825, OFF:Col3a1,
Tsk-2, Tsk2

Chr 1

ORFs

21 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1707691	30	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
411083	36	AAG ...	KSV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	C2C12
420222	51	CTG ...	LVT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	C2C12, MEF, v6-5
30398	42	GTG ...	VVL ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Testis
1137556	48	GTG ...	VTR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1125118	33	CTG ...	LDP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
419762	36	ATT ...	ILD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	C2C12
722933	87	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
31141	51	CTG ...	LVP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, C2C12, MEF, Testis
1721779	84	GTG ...	VYN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
18534	69	TTG ...	LIC ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, MEF, Testis
421148	60	ATA ...	IPG ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	C2C12
412426	39	GTG ...	VSW ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, C2C12, v6-5
642157	69	CTG ...	LAH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
680807	39	GTG ...	VKS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
673419	78	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
645372	60	CTG ...	LVP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
729684	42	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
23688	72	TTG ...	LLI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
13790	93	CTG ...	LTV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Skin_tumor
682365	54	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3

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