Transcript 343490

Transcript

ID CARD

MetamORF ID

343490

ENSMUST00000190788

Name

Bap1-208

Strand

Biotype

retained_intron

Start-end positions

31251538-31259930

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:104416

Aliases

2300006C11Rik,
AA989761, AW553466, Bap1,
ENSMUSG00000021901, MGI:1206586, mKIAA0272,
NCBI:104416, OFF:Bap1, uch-x4

Chr 14

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
347089	48	GTG ...	VQV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1852301	36	GTG ...	VNN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
343644	84	ATG ...	MDL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
344387	69	GTG ...	VDD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
466228	42	CTG ...	LTA ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, Spleen_B_cell
29365	33	ATG ...	MAL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
350298	81	GTG ...	VQC ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
347252	129	CTG ...	LAN ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
349616	63	CTG ...	LTG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
346250	42	ATG ...	MCL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
346226	54	TTG ...	LAM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
346379	54	GTG ...	VID ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
349995	51	TTG ...	LSA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
349811	117	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
28528	39	CTG ...	LDM ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	R1E
348685	90	ATG ...	MAS ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
345523	138	GTG ...	VYG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	R1E
349647	48	ATG ...	MPL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	R1E
1852375	72	TTG ...	LVD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	R1E
350352	60	ATG ...	MQL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
343489	42	GTG ...	VEE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
343581	120	CTG ...	LFK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
345981	102	CTG ...	LRN ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1350712	42	CTG ...	LNW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
351232	195	CTG ...	LIR ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
349300	90	CTG ...	LCM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E
345194	99	GTG ...	VRR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
347945	51	ATG ...	MDR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	R1E

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