Transcript 13156 | MetamORF

Transcript

ID CARD

MetamORF ID

13156

ENSMUST00000190686

Name

Srrm2-209

Strand

Biotype

protein_coding

Start-end positions

23803187-23824736

CDS Start-stop positions

23806961-23824225

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:75956

Aliases

5033413A03Rik,
AA410130, ENSMUSG00000039218, MGI:1923206,
mKIAA0324, NCBI:75956, OFF:Srrm2,
SRm300, Srrm2

Chr 17

ORFs

53 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
387582	63	TTG ...	LRL ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF
1541423	45	CTG ...	LFQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1192734	69	ACG ...	TFC ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
385211	162	GTG ...	VAG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, R1E
480806	114	ATG ...	MVC ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
703246	153	TTG ...	LCN ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
799177	150	GTG ...	VAQ ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
1195535	291	ATA ...	IED ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1678340	81	CTG ...	LRT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
703906	132	GTG ...	VTL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
387482	33	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
1718672	60	CTG ...	LIL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
481925	168	CTG ...	LDH ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1193172	33	AAG ...	KTR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
13155	153	ATG ...	MPR ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, E14, MEF, R1E, Skin_tumor, Spleen_B_cell
1193802	51	ATC ...	ICG ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
380386	96	ATG ...	MND ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, R1E
703838	81	CTG ...	LPL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
706142	93	GTG ...	VAL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1626420	45	CTG ...	LSR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
955587	75	ATC ...	ITR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
702086	84	GTG ...	VLP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
382171	66	CTG ...	LTS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, E14
705080	87	CTG ...	LVT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
709115	183	GTG ...	VVL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1191414	63	AAG ...	KNS ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
702602	51	ATG ...	MAV ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
955150	114	ATC ...	ISI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
1190832	99	ATC ...	IPS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
703375	78	CTG ...	LAH ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
481051	237	GTG ...	VDS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
955523	93	AAG ...	KPV ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
704517	75	TTG ...	LAS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
797091	156	GTG ...	VRV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	sORF Upstream	B_cell
1625869	57	CTG ...	LYN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
702980	177	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
386781	120	GTG ...	VED ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
703445	114	CTG ...	LLL ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, Brain
1626154	69	CTG ...	LYL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1192119	33	CTG ...	LEV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
706637	57	ATG ...	MWM ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
386611	66	GTG ...	VTP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
411103	33	AAG ...	KQQ ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF Upstream	C2C12
712195	210	CTG ...	LSP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, BMDC, MEF, R1E
797937	48	ATG ...	MDH ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
422226	45	ATA ...	IRK ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF Upstream	C2C12
1541384	63	CTG ...	LIT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
703165	138	GTG ...	VNV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
954343	153	AAG ...	KVF ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
1678311	72	CTG ...	LLL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
385088	108	ATG ...	MRR ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	Brain, MEF, R1E
480271	198	GTG ...	VVG ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
411229	108	ATC ...	IKS ...	Ribo-seq	ATC	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	C2C12, E14

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