Transcript 554304

Transcript

ID CARD

MetamORF ID

554304

ENSMUST00000190544

Name

Dhx9-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

153462639-153478139

CDS Start-stop positions

153476520-

CDS Relative positions

Sequences

Transcript sequence

GAC ...

Genome browsers

UCSC

Gene

NCBI:13211

Aliases

AI326842,
Ddx9, Dhx9, ENSMUSG00000042699,
HEL-5, MGI:108177, mHEL-5,
NCBI:13211, NDHII, OFF:Dhx9,
RHA

Chr 1

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
698890	114	TTG ...	LNH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
480429	144	TTG ...	LYF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
406037	210	TTG ...	LLP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
1113500	93	TTG ...	LIP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
462288	72	TTG ...	LST ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	3T3, R1E
395879	207	CTG ...	LPV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
670132	114	TTG ...	LFL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	NMD sORF	3T3, MEF
403753	126	GTG ...	VAE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, MEF
724019	30	ATG ...	MKF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
596683	162	TTG ...	LIL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
1697963	75	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	MEF
725855	126	CTG ...	LKS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	3T3, MEF
1679300	105	ATG ...	MKR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
720391	147	GTG ...	VMW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	NMD sORF	3T3, MEF
380074	177	CTG ...	LEA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	3T3
29442	132	CTG ...	LEN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	Brain
1685667	87	TTG ...	LNL ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	NMD sORF	MEF
380445	150	GTG ...	VII ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
398239	42	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF	3T3
1083343	102	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	MEF
369641	201	GTG ...	VKK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3
485466	36	TTG ...	LWM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
645573	144	ATG ...	MWF ...	Ribo-seq	ATG		2	sORFs_org_Mouse	NMD sORF	3T3, MEF
715557	132	TTG ...	LGN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	3T3
1675899	48	TTG ...	LRF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	MEF
409843	228	GTG ...	VLQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	3T3

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