Transcript 40296 | MetamORF

Transcript

ID CARD

MetamORF ID

40296

ENSMUST00000190207

Name

Tpp2-209

Strand

Biotype

protein_coding

Start-end positions

43983285-44003000

CDS Start-stop positions

-44001477

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:22019

Aliases

ENSMUSG00000041763,
MGI:102724, NCBI:22019, OFF:Tpp2,
TPP-2, Tpp2, TppII

Chr 1

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
136849	45	ATG ...	MLH ...	Ribo-seq	ATG		5	sORFs_org_Mouse	sORF	B_cell, BMDC, Brain, MEF
1448390	60	ATG ...	MLH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
1448814	78	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
124209	111	CTG ...	LEM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, MEF
362518	39	ATG ...	MLP ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	B_cell, Brain, MEF
363834	63	ATG ...	MLP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	Brain
112611	105	ATG ...	MLK ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	Brain, MEF
331173	159	GTG ...	VPW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
344853	36	CTG ...	LKH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Brain
128060	162	GTG ...	VPW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Brain
595025	30	GTG ...	VIW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
1455008	57	TTG ...	LHV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	BMDC
104512	48	ATG ...	MAA ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	sORF	B_cell, Brain, MEF
149361	102	CTG ...	LKQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, MEF
325399	33	TTG ...	LGN ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	sORF	B_cell, BMDC, Brain, MEF
819245	63	CTG ...	LLT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	sORF	B_cell, BMDC, MEF
365836	108	CTG ...	LEM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	Brain, MEF
115083	183	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, Brain
374238	30	TTG ...	LIL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain, MEF
716288	102	ATG ...	MLK ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	MEF
311125	66	TTG ...	LML ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	sORF	Brain
54828	72	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Testis
755852	30	CTG ...	LTP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	B_cell
40295	36	TTG ...	LLL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	Testis
171676	75	ATG ...	MKL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	Brain, MEF
338239	69	TTG ...	LLM ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	Brain
386020	60	CTG ...	LPM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	Brain
368682	51	CTG ...	LLF ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	BMDC, Brain
692506	99	CTG ...	LKQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
345705	54	ATG ...	MLL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	BMDC, Brain
383022	180	ATG ...	MPS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	B_cell, Brain
380418	78	CTG ...	LQE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	sORF	B_cell, Brain, MEF
116508	42	TTG ...	LHV ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	B_cell, BMDC, Brain, MEF
789362	66	ATG ...	MCP ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF	B_cell, Brain
397150	90	CTG ...	LFI ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	sORF	B_cell, Brain

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