Transcript 17216 | MetamORF

Transcript

ID CARD

MetamORF ID

17216

ENSMUST00000189160

Name

Fn1-215

Strand

Biotype

retained_intron

Start-end positions

71604097-71624344

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

NCBI:14268

Aliases

E330027I09,
ENSMUSG00000026193, Fn, Fn-1,
Fn1, MGI:95566, NCBI:14268,
OFF:Fn1

Chr 1

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
419679	75	GTG ...	VFT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
419500	54	ATG ...	MSR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	C2C12
596184	165	CTG ...	LEE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
413376	189	ACG ...	TNG ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	C2C12
579535	66	CTG ...	LSK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
695657	198	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
417833	99	ATC ...	ILA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	C2C12
84202	84	GTG ...	VEY ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	C2C12, Testis
653455	96	CTG ...	LAW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	3T3
413607	120	AGG ...	RQT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	C2C12
420985	48	AGG ...	REP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	C2C12
17215	75	GTG ...	VVS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
420263	57	ATG ...	MTR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	C2C12
657984	33	ATG ...	MWD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
418633	126	TTG ...	LTP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	C2C12
413652	105	ATT ...	IEG ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Intronic sORF	C2C12
419649	117	CTG ...	LNP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, C2C12
416549	51	ATG ...	MLR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	C2C12
411047	72	ACG ...	TNN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	C2C12
28223	96	TTG ...	LQP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
723074	156	GTG ...	VVH ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	3T3
422300	240	ATC ...	IIR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	C2C12
418555	99	CTG ...	LPG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	3T3, C2C12
1444106	189	GTG ...	VPP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
697993	33	CTG ...	LIR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3

Export data