Transcript 1007999

Transcript

ID CARD

MetamORF ID

1007999

ENSMUST00000188871

Name

Rnf2-206

Strand

Biotype

retained_intron

Start-end positions

151471154-151472031

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:19821

Aliases

AI326319,
AI450156, AU019207, dinG,
ENSMUSG00000026484, MGI:1101759, NCBI:19821,
OFF:Rnf2, Ring1B, Rnf2

Chr 1

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1285649	225	AGG ...	RLA ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
34314	48	ATG ...	MAP ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E
1007998	81	TTG ...	LEL ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC, R1E
308860	33	CTG ...	LLI ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E
1192743	39	AGG ...	RRI ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1284015	75	TTG ...	LVS ...	Ribo-seq	TTG	strong	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E
1351358	66	CTG ...	LES ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, R1E
395247	39	ATG ...	MPL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E
369727	30	TTG ...	LIT ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, R1E
1185693	36	ATA ...	IQP ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1355676	51	GTG ...	VNK ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, R1E
1282086	279	ATA ...	IKT ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	E14
1296574	36	AAG ...	KNF ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1197458	69	ATA ...	ILE ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1199795	33	ATC ...	IKP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Intronic sORF	E14

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