Transcript 954497

Transcript

ID CARD

MetamORF ID

954497

ENSMUST00000186914

Name

Srrm2-204

Strand

Biotype

processed_transcript

Start-end positions

23819308-23822528

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:75956

Aliases

5033413A03Rik,
AA410130, ENSMUSG00000039218, MGI:1923206,
mKIAA0324, NCBI:75956, OFF:Srrm2,
SRm300, Srrm2

Chr 17

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
956277	105	AAG ...	KSI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
954668	30	ATC ...	ISK ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955572	33	ATC ...	ICY ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
956390	144	ATC ...	IQD ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
956842	51	AAG ...	KTT ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955211	42	AGG ...	RWL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955859	66	ATC ...	ISS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
956714	117	AAG ...	KIE ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
703445	114	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
954496	45	AAG ...	KES ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1627569	69	CTG ...	LIV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
956163	150	ATC ...	IKI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
956483	36	ATC ...	IKN ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
387482	33	GTG ...	VPG ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
956910	45	ATC ...	IIS ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955664	87	ACG ...	TQK ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1627830	81	CTG ...	LEV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1626048	87	CTG ...	LHL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
954964	99	ATC ...	ISS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955988	108	ATC ...	ISN ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
954810	51	ACG ...	TQA ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
956019	81	AAG ...	KRP ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
957014	174	ATA ...	IDL ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955188	36	CTG ...	LTQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955539	42	ATC ...	ISI ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
954762	45	ACG ...	TLQ ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955029	135	ATC ...	IPS ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
955150	114	ATC ...	ISI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC

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