Transcript 100130

Transcript

ID CARD

MetamORF ID

100130

ENSMUST00000186879

Name

Fn1-207

Strand

Biotype

retained_intron

Start-end positions

71644477-71653172

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:14268

Aliases

E330027I09,
ENSMUSG00000026193, Fn, Fn-1,
Fn1, MGI:95566, NCBI:14268,
OFF:Fn1

Chr 1

ORFs

43 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
419047	72	ATG ...	MKG ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1350784	36	CTG ...	LAV ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
980118	78	GTG ...	VEQ ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, Liver, MEF, NSC
1618404	246	CTG ...	LKQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	MEF
396263	60	CTG ...	LLG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC
418557	225	CTG ...	LRG ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1348853	33	GTG ...	VTL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
716802	90	CTG ...	LGK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1340067	126	GTG ...	VCE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
369150	63	ATG ...	MLL ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, MEF, NSC
713529	204	GTG ...	VAT ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1320941	111	ATG ...	MDF ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
643902	69	CTG ...	LDD ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
891817	81	CTG ...	LRS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF
708263	48	GTG ...	VSG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
100129	66	TTG ...	LTN ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC
1348234	54	CTG ...	LGT ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
700213	54	CTG ...	LYL ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
9128	60	CTG ...	LGL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF
356636	69	TTG ...	LIM ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Neutrophil, NSC
1340051	33	ATG ...	MEK ...	Ribo-seq	ATG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF
1322576	33	TTG ...	LYL ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1347551	126	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC
9173	33	ATG ...	MQR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1341567	81	CTG ...	LKR ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
978595	42	GTG ...	VCL ...	Ribo-seq	GTG	weak	5	sORFs_org_Mouse	Intronic sORF	E14, Liver, MEF, NSC
644209	54	GTG ...	VSV ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
12981	48	CTG ...	LHR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
11130	54	CTG ...	LYL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	E14, MEF
581244	108	GTG ...	VPG ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1316199	48	TTG ...	LAT ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC
1356991	36	CTG ...	LHR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1347878	66	GTG ...	VGT ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
722379	87	CTG ...	LHR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
104972	123	GTG ...	VGD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, NSC
848989	51	ATG ...	MDA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF
411603	189	CTG ...	LGR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
888427	57	CTG ...	LGR ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Intronic sORF	MEF, NSC
1614745	96	CTG ...	LCL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
658689	48	TTG ...	LSR ...	Ribo-seq	TTG		5	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
1698456	198	TTG ...	LET ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
1608581	177	GTG ...	VGE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1631817	132	ATG ...	MYV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	MEF

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