Transcript 378179

Transcript

ID CARD

MetamORF ID

378179

ENSMUST00000186398

Name

Dars-203

Strand

Biotype

retained_intron

Start-end positions

128374891-128379487

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:226414

Aliases

5730439G15Rik,
Dars, Dars1, ENSMUSG00000026356,
MGI:2442544, NCBI:226414, OFF:Dars

Chr 1

ORFs

22 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
593217	144	ATG ...	MFL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E, v6-5
468616	30	CTG ...	LPS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC, R1E
1147840	186	TTG ...	LQI ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
1194634	90	AAG ...	KQM ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
768728	81	ATG ...	MLS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, R1E
1203940	102	GTG ...	VEI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1188633	63	CTG ...	LIL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1085807	192	ATG ...	MIL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	v6-5
1195843	51	AGG ...	RFS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1285926	57	TTG ...	LRR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
651968	159	GTG ...	VKE ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E, v6-5
1305765	33	AGG ...	RSQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
780272	105	TTG ...	LLS ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Neutrophil, v6-5
1180843	96	ATC ...	IQT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1308407	33	AAG ...	KVL ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
771930	96	TTG ...	LYK ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, Neutrophil
1196364	117	ATA ...	IMP ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
378178	141	GTG ...	VSY ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
708857	135	CTG ...	LCP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E, v6-5
778593	84	TTG ...	LML ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, R1E
668576	165	CTG ...	LPV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
40589	114	ATG ...	MPT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	B_cell, E14, v6-5

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