Transcript 478864

Transcript

ID CARD

MetamORF ID

478864

ENSMUST00000186358

Name

Tgif1-211

Strand

Biotype

protein_coding

Start-end positions

70844211-70851069

CDS Start-stop positions

70845229-70850887

CDS Relative positions

Sequences

Transcript sequence

CAA ...

Genome browsers

UCSC

Gene

NCBI:21815

Aliases

AA959811,
AI462167, ENSMUSG00000047407, MGI:1194497,
NCBI:21815, OFF:Tgif1, Tgif,
Tgif1

Chr 17

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
482038	240	GTG ...	VGQ ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Spleen_B_cell
706855	180	GTG ...	VYP ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	3T3
702046	225	CTG ...	LPY ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	3T3
703692	36	TTG ...	LVW ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	3T3
706177	33	GTG ...	VWD ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	3T3
36558	210	GTG ...	VTL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
480378	36	TTG ...	LFS ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	E14, Spleen_B_cell
479837	279	TTG ...	LKD ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Spleen_B_cell
480979	135	TTG ...	LEH ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Overlapping sORF Upstream	3T3, Spleen_B_cell
705138	63	ATG ...	MGL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	3T3, Glioma, Liver, MEF, MESC
37173	228	TTG ...	LLQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
701795	180	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream sORF	3T3
36066	216	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
708009	72	GTG ...	VGP ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream sORF	3T3
481252	39	CTG ...	LGL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, E14, Spleen_B_cell
36707	198	ATG ...	MKT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
479442	60	GTG ...	VDV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Spleen_B_cell
37242	84	ATG ...	MNT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
38417	204	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
1192068	99	ATA ...	IGG ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Overlapping sORF Upstream	E14
411218	39	GTG ...	VVG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, E14
482008	288	GTG ...	VTA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Downstream sORF	3T3, Spleen_B_cell
36477	150	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
37870	225	TTG ...	LQH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
707688	108	ATG ...	MAK ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative Downstream sORF	3T3, Glioma, Liver, MEF, MESC

Export data