Transcript 23732 | MetamORF

Transcript

ID CARD

MetamORF ID

23732

ENSMUST00000185687

Name

Col3a1-204

Strand

Biotype

protein_coding

Start-end positions

45335766-45340674

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAA ...

Genome browsers

UCSC

Gene

NCBI:12825

Aliases

AW550625,
Col3a-1, Col3a1, ENSMUSG00000026043,
MGI:88453, NCBI:12825, OFF:Col3a1,
Tsk-2, Tsk2

Chr 1

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
649675	69	CTG ...	LEQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
1144253	57	GTG ...	VNQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
77688	48	GTG ...	VVQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	MEF, Testis
679525	51	CTG ...	LVL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
645048	36	CTG ...	LQD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
660100	87	CTG ...	LEN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	MEF
680807	39	GTG ...	VKS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, MEF
714950	93	GTG ...	VHL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	3T3, MEF
418926	54	AAG ...	KEA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	C2C12
23731	102	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	MEF, Testis
411972	69	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	C2C12
641481	39	GTG ...	VEL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
1707481	39	GTG ...	VLT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	MEF
715205	96	CTG ...	LVH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, MEF
575368	48	GTG ...	VLE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3

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