Transcript 24943 | MetamORF

Transcript

ID CARD

MetamORF ID

24943

ENSMUST00000185466

Name

Ndufa10-204

Strand

Biotype

retained_intron

Start-end positions

92463103-92471051

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:67273

Aliases

2900053E13Rik,
ENSMUSG00000026260, MGI:1914523, NCBI:67273,
Ndufa10, OFF:Ndufa10

Chr 1

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
25041	117	TTG ...	LER ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
29213	198	CTG ...	LRY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell, Testis
91819	123	GTG ...	VVL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Testis
477600	63	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
85948	138	GTG ...	VDH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
26541	210	GTG ...	VHC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
35726	114	CTG ...	LQS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis
38419	93	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Testis
346256	111	ATG ...	MKL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
24942	183	TTG ...	LAA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Testis
25632	147	CTG ...	LHE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Testis
327666	126	GTG ...	VWT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
56469	51	ATG ...	MCP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Intronic sORF	Brain, Testis

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