Transcript 24599 | MetamORF

Transcript

ID CARD

MetamORF ID

24599

ENSMUST00000185434

Name

Cipc-202

Strand

Biotype

nonsense_mediated_decay

Start-end positions

86947043-86963807

CDS Start-stop positions

86952754-86959798

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:217732

Aliases

2310044G17Rik,
AI842544, AI853744, Cipc,
ENSMUSG00000034157, MGI:1919185, NCBI:217732,
OFF:Cipc

Chr 12

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
325461	45	CTG ...	LVR ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
25492	186	TTG ...	LIR ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Testis
25854	78	TTG ...	LQA ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Liver, Testis
324170	90	TTG ...	LSF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
665752	48	CTG ...	LPQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
327567	66	CTG ...	LAE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
325305	30	GTG ...	VRQ ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
24598	237	GTG ...	VVL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Testis
778875	66	GTG ...	VGC ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell
325296	39	CTG ...	LHG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain
25523	168	GTG ...	VLR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver
25058	102	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver
25848	216	TTG ...	LLE ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Testis
328631	72	TTG ...	LGL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
322543	42	GTG ...	VRK ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
25423	144	CTG ...	LKE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Testis
325187	63	CTG ...	LSA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
25664	213	CTG ...	LEI ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Testis
24970	153	CTG ...	LDQ ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Testis
25513	201	CTG ...	LKT ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	B_cell, Brain, Testis
324221	105	CTG ...	LRT ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
663365	30	CTG ...	LGP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	B_cell
324693	36	CTG ...	LCV ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
25414	45	GTG ...	VVA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Liver
327989	75	CTG ...	LCH ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Downstream NMD sORF	Brain
24576	42	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Liver

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