Transcript 33298 | MetamORF

Transcript

ID CARD

MetamORF ID

33298

ENSMUST00000185376

Name

Mrps9-202

Strand

Biotype

processed_transcript

Start-end positions

42851276-42899679

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTT ...

Genome browsers

UCSC

Gene

NCBI:69527

Aliases

2310002A08Rik,
AW322516, ENSMUSG00000060679, mg637,
MGI:1916777, Mrp-S9, Mrps9,
NCBI:69527, OFF:Mrps9, S9mt

Chr 1

ORFs

12 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
42983	84	CTG ...	LIG ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, E14, Liver, MEF, Neutrophil, R1E, Testis, v6-5
50966	72	ATG ...	MSK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Testis
499524	93	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
458610	126	GTG ...	VCP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
505857	30	ATG ...	MST ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
482279	42	CTG ...	LRP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
53058	66	CTG ...	LIK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
478938	51	CTG ...	LCV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
39107	150	GTG ...	VLS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
312021	84	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Spleen_B_cell
33297	165	GTG ...	VSC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell, Testis
42620	36	GTG ...	VEK ...	Ribo-seq	GTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil, R1E, Testis

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