Transcript 526440

Transcript

ID CARD

MetamORF ID

526440

ENSMUST00000185219

Name

2610001J05Rik-203

Strand

Biotype

protein_coding

Start-end positions

13869860-13871465

CDS Start-stop positions

13870532-13870711

CDS Relative positions

Sequences

Transcript sequence

ATT ...

Genome browsers

UCSC

Gene

NCBI:66520

Aliases

2610001J05Rik,
C79299, ENSMUSG00000052419, MGI:1913770,
NCBI:66520, OFF:2610001J05Rik

Chr 6

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1242958	87	ACG ...	TSN ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
194963	93	GTG ...	VWF ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
2841	33	ATG ...	MDR ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	R1E, Spleen_B_cell
2722	48	CTG ...	LLL ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
2906	42	TTG ...	LKQ ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
194167	66	GTG ...	VLA ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
68824	180	ATG ...	MNS ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	CDS sORF	3T3, BMDC, E14, MEF, R1E, Spleen_B_cell
2974	45	TTG ...	LLK ...	Ribo-seq	TTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, R1E, Spleen_B_cell
1246995	42	ATT ...	ISR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
977859	57	ATG ...	MAA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF

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