Transcript 617767

Transcript

ID CARD

MetamORF ID

617767

ENSMUST00000184737

Name

Nedd4-210

Strand

Biotype

retained_intron

Start-end positions

72662438-72672148

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:17999

Aliases

AA959633,
AL023035, AU019897, E430025J12Rik,
EG639396, ENSMUSG00000032216, Gm7265,
KIAA0093, MGI:97297, NCBI:17999,
Nedd4, Nedd4-1, Nedd4a,
OFF:Nedd4

Chr 9

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1273415	123	AGG ...	RST ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
266355	54	CTG ...	LGV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
256553	33	CTG ...	LAK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	E14
267473	57	ATG ...	MLG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
417462	135	ATT ...	IPW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
417355	141	ATC ...	IRI ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
417425	51	AGG ...	RPG ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
261547	63	ATG ...	MWM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
417320	117	ACG ...	TCC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
6507	57	GTG ...	VKV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1271540	36	ATA ...	ILV ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
262963	51	GTG ...	VLF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	MEF
265433	81	TTG ...	LNP ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
417403	81	ATA ...	IRQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Intronic sORF	E14
264149	48	CTG ...	LFT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
6699	63	GTG ...	VRV ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
269456	162	CTG ...	LDK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
617766	114	GTG ...	VGL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
1274483	69	ACG ...	TPP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
262068	66	GTG ...	VAD ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
256819	66	CTG ...	LEE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	E14, MEF
1274271	84	ACG ...	TSC ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1270737	72	AAG ...	KMV ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
257423	30	GTG ...	VSL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
258060	45	ATG ...	MLQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, MEF
262965	48	GTG ...	VML ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
255136	69	ATG ...	MVA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF

Export data