Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

536164

ID

ENSMUST00000182149

Name

Prrc2c-202

Strand

-

Biotype

protein_coding

Start-end positions

162670725-162740525

CDS Start-stop positions

162673584-162724815

CDS Relative positions

-

Sequences

Transcript sequence

ATC ...

Gene

ID

NCBI:226562

Aliases

1810043M20Rik,
9630039I18Rik, A630006J20, Bat2d,
Bat2d1, Bat2l2, E130112L15Rik,
ENSMUSG00000040225, MGI:1913754, mKIAA1096,
NCBI:226562, OFF:Prrc2c, Prrc2c,
Prrc3


Chr 1

ORFs

153 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

702675 141

GTG ...

VLT ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
706804 33

CTG ...

LRK ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
505051 168

TTG ...

LEL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
298768 81

ATG ...

MQR ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
749180 126

ATG ...

MDL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
498945 90

GTG ...

VLW ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
749639 276

ATG ...

MKL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
518790 198

GTG ...

VSI ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
495478 192

ATG ...

MVK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
415387 111

ATG ...

MMA ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
538459 144

GTG ...

VLR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
933277 39

AAG ...

KAC ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
729917 75

GTG ...

VLV ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
494668 93

ATG ...

MMS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
495589 189

GTG ...

VKT ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
492308 177

GTG ...

VLK ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
468520 162

CTG ...

LRT ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
696377 123

CTG ...

LCP ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
488362 90

ATG ...

MLR ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
970734 150

AAG ...

KES ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
736701 117

ATG ...

MRW ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
504772 159

TTG ...

LEL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
496316 216

ATG ...

MKE ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
540341 114

ATG ...

MMM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
954137 45

ATC ...

INR ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
707789 102

CTG ...

LED ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
505617 141

CTG ...

LRT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
500709 162

TTG ...

LTQ ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
427768 39

GTG ...

VRF ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
428594 69

GTG ...

VAA ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
490981 210

CTG ...

LRQ ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
464871 162

ATG ...

MES ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell
499074 180

ATG ...

MQH ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
540116 63

CTG ...

LGH ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
31476 81

TTG ...

LVF ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell
456048 63

ATG ...

MSR ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
495933 99

GTG ...

VMM ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
494313 180

GTG ...

VVL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
685086 135

GTG ...

VLR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
481723 168

CTG ...

LKM ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
538995 72

CTG ...

LNL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
504411 117

TTG ...

LCP ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
490763 174

TTG ...

LKL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
751169 123

GTG ...

VDQ ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
485753 63

CTG ...

LIT ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
447120 234

ATG ...

MGV ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
713387 78

ATG ...

MVV ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
746238 87

CTG ...

LSL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
546948 36

CTG ...

LLW ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
36109 150

TTG ...

LAV ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
495908 90

CTG ...

LNR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
459143 123

GTG ...

VKR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
647978 42

TTG ...

LLE ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF
491752 180

TTG ...

LYG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
460804 96

TTG ...

LSE ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
463297 219

CTG ...

LLI ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
720028 45

GTG ...

VEG ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
450910 84

CTG ...

LNR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
736175 105

ATG ...

MGQ ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
684833 99

ATG ...

MKS ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
467122 129

CTG ...

LRT ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    sORF
    Upstream
3T3
595365 138

CTG ...

LTL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
501343 267

GTG ...

VSG ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3
701982 153

TTG ...

LTQ ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
459882 111

GTG ...

VFL ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
749136 60

CTG ...

LLP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
744539 123

ATG ...

MKM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
678432 156

CTG ...

LKK ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
544801 111

CTG ...

LLI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
922305 183

AAG ...

KKV ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
700379 48

CTG ...

LSS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
539747 36

CTG ...

LQS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
671939 129

GTG ...

VKK ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
460485 75

ATG ...

MYG ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
957975 297

AAG ...

KDT ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
684607 93

TTG ...

LLA ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
504902 192

ATG ...

MGR ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
470050 54

ATG ...

MKY ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
503287 204

ATG ...

MAH ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
499048 90

ATG ...

MSK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
546367 105

CTG ...

LCF ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
728754 39

ATG ...

MKS ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
542287 285

TTG ...

LIA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
950868 63

AAG ...

KAE ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
479473 141

ATG ...

MSS ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
466451 99

CTG ...

LIL ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
323783 90

TTG ...

LEK ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
494554 96

ATG ...

MMM ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
935639 174

ATA ...

ISQ ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
736682 240

CTG ...

LLS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
743257 135

ATG ...

MKT ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
744004 54

CTG ...

LKK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
489762 300

TTG ...

LYA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Overlapping
    sORF
    Upstream
3T3
581379 123

ATG ...

MAF ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
643894 117

CTG ...

LHT ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
738306 291

CTG ...

LEL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
461913 126

CTG ...

LPE ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
18979 69

CTG ...

LTL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
747786 186

GTG ...

VGR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
678439 105

CTG ...

LKG ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
51008 63

CTG ...

LIR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
339826 66

TTG ...

LQH ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
9342 69

TTG ...

LVS ...

Ribo-seq
TTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
730182 48

CTG ...

LIR ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
482891 102

ATG ...

MDL ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, BMDC
668666 72

CTG ...

LYA ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
702816 87

GTG ...

VQD ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
477327 51

TTG ...

LIR ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
675132 204

ATG ...

MAQ ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell
721218 99

GTG ...

VCL ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
538430 39

ATG ...

MQG ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
90482 54

CTG ...

LLT ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
475289 156

ATG ...

MCL ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
542014 66

CTG ...

LAI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
743705 171

CTG ...

LEI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
932170 84

AAG ...

KSI ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
670968 132

CTG ...

LSV ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
542066 147

TTG ...

LVL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
529118 105

CTG ...

LVS ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
544411 72

ATG ...

MKK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC
496267 189

ATG ...

MLF ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
743287 57

CTG ...

LLK ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
24085 87

ATG ...

MSF ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3
664308 96

ATG ...

MLL ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
669337 147

TTG ...

LLK ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
489295 210

ATG ...

MGR ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
655448 66

CTG ...

LLG ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
702473 138

GTG ...

VCF ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
545074 129

GTG ...

VPV ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
452309 108

GTG ...

VRV ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
680624 168

TTG ...

LMT ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
460597 168

TTG ...

LYG ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    sORF
    Upstream
3T3
702034 30

CTG ...

LQS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
683200 126

ATG ...

MPS ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
722575 60

TTG ...

LWS ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
560768 126

GTG ...

VVT ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
742893 180

GTG ...

VAH ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
958597 114

ATC ...

IDK ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
645547 33

ATG ...

MTI ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
659873 177

GTG ...

VRS ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
680408 36

TTG ...

LIQ ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
41622 132

GTG ...

VAR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
662068 138

TTG ...

LVL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
954657 192

ATC ...

ILS ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
429173 84

GTG ...

VAH ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
690474 75

GTG ...

VVS ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
499929 117

TTG ...

LQL ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell
326265 105

ATG ...

MGY ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell
468972 87

TTG ...

LFP ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
505787 78

TTG ...

LEA ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
681517 144

CTG ...

LVL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
490588 129

GTG ...

VKR ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
641914 102

ATG ...

MVQ ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5