Transcript 1096 | MetamORF

Transcript

ID CARD

MetamORF ID

1096

ENSMUST00000180250

Name

Eya3-213

Strand

Biotype

protein_coding

Start-end positions

132639046-132724762

CDS Start-stop positions

132670225-132721359

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:14050

Aliases

AI844637,
ENSMUSG00000028886, Eya3, MGI:109339,
NCBI:14050, OFF:Eya3

Chr 4

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
509068	36	ATG ...	MSC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF Upstream	BMDC
1095	33	CTG ...	LDP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor
556937	159	CTG ...	LSR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
557613	129	ATG ...	MPA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
514504	72	CTG ...	LLV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
558741	96	ATG ...	MDE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
515071	69	TTG ...	LVP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
555751	102	TTG ...	LEM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
556610	132	CTG ...	LMP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1475	42	CTG ...	LDP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Skin_tumor
516372	39	ATG ...	MSC ...	Ribo-seq	ATG		3	sORFs_org_Mouse	sORF Upstream	BMDC, Brain, Spleen_B_cell
557770	108	GTG ...	VNW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1225397	201	ATG ...	MRI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14

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