Metam
ORF

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Transcript

ID CARD

MetamORF ID

30880

ID

ENSMUST00000180086

Name

H1f0-201

Strand

+

Biotype

protein_coding

Start-end positions

79028212-79030498

CDS Start-stop positions

79028722-79029306

CDS Relative positions

511-1095

Sequences

Transcript sequence

GGC ...

Gene

ID

NCBI:14958

Aliases

D130017D06Rik,
ENSMUSG00000096210, H1-0, H1(0),
H1f0, H1fv, MGI:95893,
NCBI:14958, OFF:H1f0


Chr 15

ORFs

25 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1700771 78

TTG ...

LLG ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    sORF
MEF
949646 225

ATC ...

IGR ...

Ribo-seq
ATC moderate 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, E14
1181031 60

ATC ...

IAS ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
E14
1044081 123

CTG ...

LGK ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, Neutrophil
31787 45

CTG ...

LHS ...

Ribo-seq
CTG moderate 14 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Brain, E14,
Liver, MEF, Neutrophil,
R1E, Testis
1182365 156

AAG ...

KGG ...

Ribo-seq
AAG strong 1 sORFs_org_Mouse
    sORF
    Upstream
E14
681851 267

ATG ...

MRR ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    sORF
    Upstream
3T3, Brain, Glioma,
Liver, MEF, MESC,
Neutrophil
1180458 117

AGG ...

RQR ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
32218 102

GTG ...

VPA ...

Ribo-seq
GTG moderate 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, NSC, Testis
688273 222

GTG ...

VEA ...

Ribo-seq
GTG strong 6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Brain, E14,
MEF, Neutrophil
687284 102

GTG ...

VGA ...

Ribo-seq
GTG strong 5 sORFs_org_Mouse
    sORF
    Upstream
3T3, Brain, MEF,
Neutrophil
32501 114

CTG ...

LSR ...

Ribo-seq
CTG weak 11 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
Testis
1044339 108

CTG ...

LWR ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
MEF, Neutrophil
30879 126

CTG ...

LLS ...

Ribo-seq
CTG weak 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
Testis
356316 54

TTG ...

LSK ...

Ribo-seq
TTG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, NSC
360665 243

ATG ...

MSP ...

Ribo-seq
ATG moderate 10 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, NSC
360236 285

GTG ...

VER ...

Ribo-seq
GTG moderate 13 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, Brain, E14,
Liver, MEF, NSC,
R1E
421375 258

AGG ...

RFC ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
C2C12
31717 87

CTG ...

LPR ...

Ribo-seq
CTG weak 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, Liver,
MEF, NSC, Testis
1180931 48

ACG ...

TRS ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    sORF
    Upstream
E14
32025 153

CTG ...

LPP ...

Ribo-seq
CTG moderate 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Liver, MEF, NSC,
Testis
684808 171

CTG ...

LGA ...

Ribo-seq
CTG strong 6 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, Brain, E14,
MEF, Neutrophil
31109 45

GTG ...

VRT ...

Ribo-seq
GTG weak 12 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, Liver, MEF,
Testis
1181090 201

AAG ...

KSR ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
363715 291

CTG ...

LLV ...

Ribo-seq
CTG moderate 13 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, Brain, E14,
Liver, MEF, NSC,
R1E

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5