Transcript 1618 | MetamORF

Transcript

ID CARD

MetamORF ID

1618

ENSMUST00000179939

Name

Atp2a2-203

Strand

Biotype

nonsense_mediated_decay

Start-end positions

122453513-122502174

CDS Start-stop positions

122457151-122501685

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:11938

Aliases

9530097L16Rik,
Atp2a2, D5Wsu150e, ENSMUSG00000029467,
MGI:88110, mKIAA4195, NCBI:11938,
OFF:Atp2a2, SERCA2, Serca2a,
SERCA2B

Chr 5

ORFs

170 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
172631	138	GTG ...	VRG ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, Brain, MEF, Neutrophil, v6-5
175746	36	CTG ...	LLA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain
565182	105	ATG ...	MLA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, NSC
167546	69	TTG ...	LNL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
560572	81	CTG ...	LRW ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver, NSC, v6-5
65976	228	CTG ...	LKI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	CDS NMD sORF	Brain, E14, Neutrophil, Testis
1913	216	CTG ...	LAV ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
183571	51	CTG ...	LTP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, v6-5
65827	231	GTG ...	VND ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
1772	63	GTG ...	VCM ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, Skin_tumor, v6-5
564403	30	CTG ...	LLS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, v6-5
178608	90	GTG ...	VNL ...	Ribo-seq	GTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
181091	156	ATG ...	MTH ...	Ribo-seq	ATG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, R1E, v6-5
64244	159	GTG ...	VEE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil, Testis
2153	171	GTG ...	VTS ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, Skin_tumor, Testis, v6-5
64116	237	CTG ...	LMV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	CDS NMD sORF	Brain, E14, R1E, Testis
182906	78	TTG ...	LLE ...	Ribo-seq	TTG		9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
559259	120	GTG ...	VCA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC
61775	138	TTG ...	LEL ...	Ribo-seq	TTG		10	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
65136	102	CTG ...	LIS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
169860	39	CTG ...	LLI ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, NSC, v6-5
66300	99	GTG ...	VQR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
170538	42	GTG ...	VLC ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, v6-5
570603	45	TTG ...	LWL ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, NSC
1973	216	GTG ...	VAI ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
65631	210	GTG ...	VIL ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	CDS NMD sORF	3T3, Brain, E14, Neutrophil, NSC, R1E, Testis, v6-5
561057	33	GTG ...	VTL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, v6-5
64289	249	CTG ...	LTQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	CDS NMD sORF	Brain, Testis
1560005	81	CTG ...	LLH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
65108	75	CTG ...	LSF ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, Testis, v6-5
1559487	81	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
560272	63	ATG ...	MTT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, NSC, v6-5
176402	33	CTG ...	LLK ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
62347	75	GTG ...	VLL ...	Ribo-seq	GTG	weak	9	sORFs_org_Mouse	CDS NMD sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
183198	87	GTG ...	VPS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, R1E
177542	108	ATG ...	MVA ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, NSC, R1E
1806	72	CTG ...	LET ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, v6-5
2037	99	GTG ...	VPA ...	Ribo-seq	GTG	moderate	10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, Skin_tumor, v6-5
66011	57	CTG ...	LVV ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	CDS NMD sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
64561	180	CTG ...	LPA ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, Neutrophil, R1E, Testis
170245	51	ATG ...	MKW ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, v6-5
65597	66	CTG ...	LKW ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, Testis
1684	132	CTG ...	LKS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, R1E, Skin_tumor, v6-5
62380	111	ATG ...	MLS ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, Testis, v6-5
62604	213	CTG ...	LKK ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
1511719	39	TTG ...	LTD ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	MEF, NSC
521722	33	CTG ...	LRC ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	Neutrophil, Spleen_B_cell
175950	42	TTG ...	LHC ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
62266	216	TTG ...	LPV ...	Ribo-seq	TTG	weak	6	sORFs_org_Mouse	CDS NMD sORF	Brain, E14, Neutrophil, R1E, Testis, v6-5
65697	165	CTG ...	LEQ ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	CDS NMD sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
177240	63	CTG ...	LTL ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
176400	45	CTG ...	LPL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF
62259	111	CTG ...	LSA ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	CDS NMD sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
1969	108	GTG ...	VKC ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Skin_tumor, Testis, v6-5
1557915	78	CTG ...	LHG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
168185	120	TTG ...	LPW ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, R1E, v6-5
1921	150	TTG ...	LAW ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, Skin_tumor, Testis
562687	81	TTG ...	LCC ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
62738	90	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
1062532	159	GTG ...	VEK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil
568426	102	TTG ...	LAL ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, NSC
178357	54	ATG ...	MVC ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF
181148	36	GTG ...	VAL ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, v6-5
171499	51	GTG ...	VGQ ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain
1883	156	CTG ...	LAL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, Skin_tumor, Testis
181903	30	GTG ...	VTK ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, v6-5
180899	33	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
181705	132	GTG ...	VHP ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, R1E, v6-5
185374	39	CTG ...	LDP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF
64181	150	GTG ...	VLG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil, Testis
518072	117	CTG ...	LAA ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	3T3, Spleen_B_cell
172734	120	TTG ...	LLL ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, v6-5
1813	207	GTG ...	VYE ...	Ribo-seq	GTG		4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil, NSC, Skin_tumor, Testis
1637	84	CTG ...	LEL ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, Skin_tumor, Testis
173246	117	CTG ...	LLG ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, v6-5
1935	57	CTG ...	LCN ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Skin_tumor, Testis
563895	45	CTG ...	LVL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, MEF, NSC
62816	141	GTG ...	VQP ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	CDS NMD sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
175985	201	ATG ...	MRR ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, E14, NSC
173539	132	TTG ...	LGI ...	Ribo-seq	TTG	strong	6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, NSC, R1E
65777	180	GTG ...	VAR ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	CDS NMD sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
2296	30	TTG ...	LAS ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, Neutrophil, Skin_tumor, v6-5
1063256	162	CTG ...	LVE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil
168923	36	CTG ...	LRV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
64729	153	CTG ...	LEF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, Testis
178974	72	CTG ...	LRS ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, v6-5
167299	90	ATG ...	MPA ...	Ribo-seq	ATG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
182713	84	CTG ...	LSP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
169923	183	CTG ...	LSA ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative NMD Overlapping sORF Upstream	3T3, Brain, MEF, Neutrophil
61984	144	CTG ...	LDI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
61407	147	CTG ...	LGH ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Neutrophil, Testis
63850	75	TTG ...	LVV ...	Ribo-seq	TTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, Testis, v6-5
62198	87	CTG ...	LWR ...	Ribo-seq	CTG		8	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, Testis, v6-5
1558105	60	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
517781	168	GTG ...	VRR ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	NMD sORF Upstream	3T3, Neutrophil, Spleen_B_cell
181201	51	CTG ...	LLP ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, R1E
1617	222	GTG ...	VAL ...	Ribo-seq	GTG		11	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
63345	63	CTG ...	LLS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, Testis, v6-5
169602	120	ATG ...	MTQ ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, NSC, R1E
172864	36	GTG ...	VAR ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	NMD sORF Upstream	Brain
183694	105	GTG ...	VAP ...	Ribo-seq	GTG	strong	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, NSC
563796	162	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	NMD sORF Upstream	3T3
1661975	81	TTG ...	LSS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
562712	186	TTG ...	LWP ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, E14, NSC, v6-5
64881	72	ATG ...	MSL ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, Testis
63709	72	CTG ...	LLI ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	CDS NMD sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
568506	48	TTG ...	LEK ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, v6-5
64548	123	GTG ...	VYR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
176417	33	CTG ...	LSP ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
177598	39	CTG ...	LRW ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF
64140	174	CTG ...	LMK ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, R1E, Testis
65814	165	CTG ...	LGF ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, Neutrophil, R1E, Testis
1311148	72	TTG ...	LYP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
560616	93	CTG ...	LLP ...	Ribo-seq	CTG	weak	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
62714	168	GTG ...	VAK ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
65810	141	CTG ...	LAD ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
64266	114	GTG ...	VAA ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Neutrophil, R1E, Testis, v6-5
2321	45	TTG ...	LLS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, NSC, Skin_tumor, v6-5
63825	81	TTG ...	LVA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Testis
1745	150	CTG ...	LAT ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, Skin_tumor, Testis
2114	276	CTG ...	LCR ...	Ribo-seq	CTG		12	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
64301	108	GTG ...	VGA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, Neutrophil, Testis
559919	96	CTG ...	LPP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, NSC
170992	48	TTG ...	LPQ ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, R1E
1085501	33	TTG ...	LVT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, v6-5
170060	51	CTG ...	LWP ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, R1E, v6-5
175268	33	CTG ...	LCG ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, v6-5
185195	66	TTG ...	LPW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, R1E
180179	57	CTG ...	LSL ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, v6-5
62868	192	GTG ...	VTD ...	Ribo-seq	GTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, Neutrophil, R1E, Testis
564908	99	ATG ...	MAF ...	Ribo-seq	ATG	moderate	7	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
166974	87	CTG ...	LLL ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Liver, NSC, v6-5
560137	30	CTG ...	LSS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, R1E, v6-5
562641	138	CTG ...	LPP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
63589	99	CTG ...	LVS ...	Ribo-seq	CTG	moderate	10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
62712	54	GTG ...	VAA ...	Ribo-seq	GTG	strong	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, Liver, Neutrophil, NSC, Testis
64210	36	GTG ...	VWA ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, R1E, Testis
175202	192	TTG ...	LGS ...	Ribo-seq	TTG	strong	7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, NSC, R1E, v6-5
62281	96	GTG ...	VSN ...	Ribo-seq	GTG	weak	10	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Testis, v6-5
66077	255	CTG ...	LNL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	CDS NMD sORF	Brain, Testis
2354	189	CTG ...	LPA ...	Ribo-seq	CTG		11	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
62570	231	GTG ...	VLK ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	CDS NMD sORF	Brain, E14, R1E, Testis
184767	30	ATG ...	MTL ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, v6-5
179491	177	GTG ...	VGC ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, v6-5
62993	84	CTG ...	LDK ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, Testis, v6-5
1511715	30	CTG ...	LDQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
170251	114	CTG ...	LGK ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, v6-5
2077	42	TTG ...	LSS ...	Ribo-seq	TTG		6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, NSC, Skin_tumor, v6-5
518369	156	CTG ...	LGE ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	NMD sORF Upstream	3T3, Neutrophil
182135	30	CTG ...	LDH ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF, v6-5
565607	78	ATG ...	MHR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
2127	75	GTG ...	VIE ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, Skin_tumor
1979	282	GTG ...	VKL ...	Ribo-seq	GTG		12	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Skin_tumor, Testis, v6-5
564440	30	GTG ...	VPG ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, v6-5
64596	54	GTG ...	VVW ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	CDS NMD sORF	3T3, Brain, E14, MEF, Neutrophil, NSC, R1E, Testis, v6-5
171462	54	GTG ...	VSS ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, Liver, MEF, NSC
565071	60	CTG ...	LAV ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, NSC, v6-5
62046	114	CTG ...	LPS ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC, Testis, v6-5
169100	84	CTG ...	LEL ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, MEF, NSC, v6-5
64609	195	CTG ...	LVT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain, E14, Neutrophil, R1E, Testis
175389	102	CTG ...	LQW ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, Liver, MEF, NSC, v6-5
559651	147	GTG ...	VCS ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	3T3, Brain, E14, NSC
1668	150	CTG ...	LGQ ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, E14, MEF, R1E, Skin_tumor, v6-5
63858	255	CTG ...	LTA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, Neutrophil, R1E, Testis, v6-5
520157	138	GTG ...	VIQ ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	NMD sORF Upstream	3T3, Neutrophil
173085	153	TTG ...	LQS ...	Ribo-seq	TTG	moderate	7	sORFs_org_Mouse	InCDS NMD Overlapping sORF	3T3, Brain, E14, NSC, R1E, v6-5
63423	105	GTG ...	VET ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, MEF, Neutrophil, NSC, Testis, v6-5
2147	57	ATG ...	MRK ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, MEF, Skin_tumor, v6-5
1559358	84	GTG ...	VLL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
1774	87	TTG ...	LLE ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	3T3, Brain, Skin_tumor, Testis

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