Transcript 1701324

Transcript

ID CARD

MetamORF ID

1701324

ENSMUST00000178710

Name

Clasp1-204

Strand

Biotype

protein_coding

Start-end positions

118389058-118609432

CDS Start-stop positions

118419724-118606994

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:76707

Aliases

1700030C23Rik,
5730583A19Rik, B130045P17Rik, Clasp1,
CLASP1alpha, ENSMUSG00000064302, MGI:1923957,
NCBI:76707, OFF:Clasp1

Chr 1

ORFs

27 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1530594	33	CTG ...	LAL ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
685308	48	ATG ...	MSF ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
803146	39	ATG ...	MWE ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1620458	144	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	MEF
791904	30	ATG ...	MTS ...	Ribo-seq	ATG	weak	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
522230	36	CTG ...	LLN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1642092	69	CTG ...	LLT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
257	93	CTG ...	LVR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1548397	150	ATG ...	MTC ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
501592	33	CTG ...	LNY ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1711280	39	ATG ...	MEL ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1632967	60	TTG ...	LST ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1719513	39	GTG ...	VAF ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
491955	57	GTG ...	VNN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1617454	30	TTG ...	LWM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
468155	114	ATG ...	MVH ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
310869	45	ATG ...	MSQ ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
501128	87	GTG ...	VAV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	MEF
1726068	84	ATG ...	MPP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
397746	72	ATG ...	MKY ...	Ribo-seq	ATG	moderate	1	Johnstone2016	Alternative sORF Upstream	Glioma, Liver, MEF, MESC
1702161	105	CTG ...	LMM ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1228244	117	ATG ...	MEC ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1613707	66	CTG ...	LTL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1640446	108	TTG ...	LCQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
807169	48	ATG ...	MGD ...	Ribo-seq	ATG		1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
1549251	123	ATG ...	MVP ...	Ribo-seq	ATG		1	Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
368630	51	GTG ...	VLW ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF

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