Transcript 44481 | MetamORF

Transcript

ID CARD

MetamORF ID

44481

ENSMUST00000177532

Name

Tmem70-204

Strand

Biotype

processed_transcript

Start-end positions

16665210-16677215

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:70397

Aliases

1110020A09Rik,
2210416J16Rik, ENSMUSG00000025940, MGI:1915068,
NCBI:70397, OFF:Tmem70, Tmem70

Chr 1

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
196962	39	TTG ...	LGT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
693497	144	GTG ...	VAA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
335017	42	TTG ...	LLG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
473337	198	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
1406502	45	CTG ...	LIY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
451814	210	TTG ...	LWG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
804707	243	GTG ...	VGS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
460653	57	GTG ...	VWP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
485950	294	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
559434	207	TTG ...	LGL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
768077	228	ATG ...	MAG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
470634	159	CTG ...	LET ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	B_cell
44480	54	TTG ...	LGG ...	Ribo-seq	TTG		6	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver, MEF, Spleen_B_cell, Testis
47689	60	TTG ...	LGL ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF, Testis
709382	210	CTG ...	LLG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Liver
343555	201	TTG ...	LGG ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, Liver
814684	63	CTG ...	LLG ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF

Export data